RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 IGHV3-43A0A0B4J1X8 118 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 H3BUX3 64 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 RAB27BO00194 218 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 NAPSAO96009 420 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 HBZP02008 142 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 TFAP2AP05549 437 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 IGHV3-43DP0DP04 118 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 HTR1DP28221 377 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 ALDH3B2P48448 385 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 NCS1P62166 190 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 ACTG1P63261 375 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 MINOS1Q5TGZ0 78 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 C16orf87Q6PH81 154 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 SLC16A12Q6ZSM3 486 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 PRR18Q8N4B5 295 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 OR10A7Q8NGE5 316 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 ZNF596Q8TC21 504 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 PTX4Q96A99 478 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 MALSU1Q96EH3 234 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 SSX3Q99909 188 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 DPAGT1Q9H3H5 408 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 TAF9BQ9HBM6 251 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 CHMP1AQ9HD42 196 aaPredicted RBP11.42□□□□□ -0.58
PTCH1-226ENST00000553011 MBNL3Q9NUK0 354 aaKnown RBP11.42□□□□□ -0.58
PTCH1-226ENST00000553011 PSG11Q9UQ72 335 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 HILPDAQ9Y5L2 63 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 MINOS1-NBL1R4GNA1 71 aa11.42□□□□□ -0.58
PTCH1-226ENST00000553011 A0A1W2PPE3 182 aa11.41□□□□□ -0.58
PTCH1-226ENST00000553011 F2RL2O00254 374 aa11.41□□□□□ -0.58
PTCH1-226ENST00000553011 SDCBPO00560 298 aaPredicted RBP11.41□□□□□ -0.58
PTCH1-226ENST00000553011 TOR1AO14656 332 aa11.41□□□□□ -0.58
PTCH1-226ENST00000553011 SPINT2O43291 252 aa11.41□□□□□ -0.58
PTCH1-226ENST00000553011 RPS19P39019 145 aaKnown RBP11.41□□□□□ -0.58
PTCH1-226ENST00000553011 GNG10P50151 68 aa11.41□□□□□ -0.58
PTCH1-226ENST00000553011 PRRX1P54821 245 aa11.41□□□□□ -0.58
PTCH1-226ENST00000553011 LOXL3P58215 753 aa11.41□□□□□ -0.58
PTCH1-226ENST00000553011 VBP1P61758 197 aa11.41□□□□□ -0.58
PTCH1-226ENST00000553011 FAM189A2Q15884 450 aa11.41□□□□□ -0.58
PTCH1-226ENST00000553011 LRRC75BQ2VPJ9 315 aa11.41□□□□□ -0.58
PTCH1-226ENST00000553011 HLA-DRB5Q30154 266 aa11.41□□□□□ -0.58
PTCH1-226ENST00000553011 TRAT1Q6PIZ9 186 aa11.41□□□□□ -0.58
PTCH1-226ENST00000553011 OR5H6Q8NGV6 325 aa11.41□□□□□ -0.58
PTCH1-226ENST00000553011 OR10R2Q8NGX6 335 aa11.41□□□□□ -0.58
PTCH1-226ENST00000553011 OR9G1Q8NH87 305 aa11.41□□□□□ -0.58
PTCH1-226ENST00000553011 SETD6Q8TBK2 473 aa11.41□□□□□ -0.58
PTCH1-226ENST00000553011 RAB3CQ96E17 227 aa11.41□□□□□ -0.58
PTCH1-226ENST00000553011 ATG5Q9H1Y0 275 aa11.41□□□□□ -0.58
PTCH1-226ENST00000553011 GFOD1Q9NXC2 390 aa11.41□□□□□ -0.58
PTCH1-226ENST00000553011 KCNIP1Q9NZI2 227 aa11.41□□□□□ -0.58
PTCH1-226ENST00000553011 DPM3Q9P2X0 92 aa11.41□□□□□ -0.58
PTCH1-226ENST00000553011 KCNK7Q9Y2U2 307 aa11.41□□□□□ -0.58
PTCH1-226ENST00000553011 A0A075B6Q4 140 aa11.4□□□□□ -0.58
PTCH1-226ENST00000553011 METTL21EPA6NDL7 271 aa11.4□□□□□ -0.58
PTCH1-226ENST00000553011 BTBD17A6NE02 478 aa11.4□□□□□ -0.58
PTCH1-226ENST00000553011 FAM181BA6NEQ2 426 aa11.4□□□□□ -0.58
PTCH1-226ENST00000553011 BUB1B-PAK6H3BSN5 160 aa11.4□□□□□ -0.58
PTCH1-226ENST00000553011 J3QR06 171 aa11.4□□□□□ -0.58
PTCH1-226ENST00000553011 GPR137BO60478 399 aa11.4□□□□□ -0.58
PTCH1-226ENST00000553011 SERPINB10P48595 397 aa11.4□□□□□ -0.58
PTCH1-226ENST00000553011 RAB13P51153 203 aa11.4□□□□□ -0.58
PTCH1-226ENST00000553011 LY6EQ16553 131 aa11.4□□□□□ -0.58
PTCH1-226ENST00000553011 GPR107Q5VW38 600 aa11.4□□□□□ -0.58
PTCH1-226ENST00000553011 ZNF880Q6PDB4 577 aa11.4□□□□□ -0.58
PTCH1-226ENST00000553011 ANKRD13BQ86YJ7 626 aa11.4□□□□□ -0.58
PTCH1-226ENST00000553011 OR10V1Q8NGI7 309 aa11.4□□□□□ -0.58
PTCH1-226ENST00000553011 OR52M1Q8NGK5 317 aa11.4□□□□□ -0.58
PTCH1-226ENST00000553011 PIFOQ8TCI5 191 aa11.4□□□□□ -0.58
PTCH1-226ENST00000553011 CMSS1Q9BQ75 279 aaKnown RBP11.4□□□□□ -0.58
PTCH1-226ENST00000553011 MMP28Q9H239 520 aa11.4□□□□□ -0.58
PTCH1-226ENST00000553011 VPREB3Q9UKI3 123 aa11.4□□□□□ -0.58
PTCH1-226ENST00000553011 TRBV6-6A0A0A6YYG2 114 aa11.39□□□□□ -0.59
PTCH1-226ENST00000553011 LEUTXA8MZ59 168 aa11.39□□□□□ -0.59
PTCH1-226ENST00000553011 MFNGO00587 321 aa11.39□□□□□ -0.59
PTCH1-226ENST00000553011 GABARAPO95166 117 aa11.39□□□□□ -0.59
PTCH1-226ENST00000553011 HIST1H1DP16402 221 aaKnown RBP11.39□□□□□ -0.59
PTCH1-226ENST00000553011 GNB3P16520 340 aa11.39□□□□□ -0.59
PTCH1-226ENST00000553011 GNMTQ14749 295 aa11.39□□□□□ -0.59
PTCH1-226ENST00000553011 HMGN3Q15651 99 aa11.39□□□□□ -0.59
PTCH1-226ENST00000553011 AANATQ16613 207 aa11.39□□□□□ -0.59
PTCH1-226ENST00000553011 GPR141Q7Z602 305 aa11.39□□□□□ -0.59
PTCH1-226ENST00000553011 ZNF554Q86TJ5 538 aa11.39□□□□□ -0.59
PTCH1-226ENST00000553011 OR5R1Q8NH85 324 aa11.39□□□□□ -0.59
PTCH1-226ENST00000553011 SLC25A38Q96DW6 304 aa11.39□□□□□ -0.59
PTCH1-226ENST00000553011 RIMS4Q9H426 269 aaPredicted RBP11.39□□□□□ -0.59
PTCH1-226ENST00000553011 C12orf4Q9NQ89 552 aa11.39□□□□□ -0.59
PTCH1-226ENST00000553011 RHBDL2Q9NX52 303 aa11.39□□□□□ -0.59
PTCH1-226ENST00000553011 GNG12Q9UBI6 72 aa11.39□□□□□ -0.59
PTCH1-226ENST00000553011 TMEM89A2RUT3 159 aa11.38□□□□□ -0.59
PTCH1-226ENST00000553011 VGLL3A8MV65 326 aa11.38□□□□□ -0.59
PTCH1-226ENST00000553011 LY6LH3BQJ8 138 aa11.38□□□□□ -0.59
PTCH1-226ENST00000553011 SLC31A2O15432 143 aa11.38□□□□□ -0.59
PTCH1-226ENST00000553011 CD3GP09693 182 aa11.38□□□□□ -0.59
PTCH1-226ENST00000553011 HKR1P10072 659 aa11.38□□□□□ -0.59
PTCH1-226ENST00000553011 CTF1Q16619 201 aa11.38□□□□□ -0.59
PTCH1-226ENST00000553011 TPTE2P1Q5T6R2 138 aa11.38□□□□□ -0.59
PTCH1-226ENST00000553011 MOB1BQ7L9L4 216 aa11.38□□□□□ -0.59
PTCH1-226ENST00000553011 OR52L2PQ8NGH6 319 aa11.38□□□□□ -0.59
PTCH1-226ENST00000553011 GCDHQ92947 438 aaPredicted RBP11.38□□□□□ -0.59
PTCH1-226ENST00000553011 Q9N2K0 584 aa11.38□□□□□ -0.59
PTCH1-226ENST00000553011 RAB9BQ9NP90 201 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms