RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 ZNF580Q9UK33 172 aa10.1□□□□□ -0.79
PTCH1-218ENST00000548945 RPL36Q9Y3U8 105 aaKnown RBP10.1□□□□□ -0.79
PTCH1-218ENST00000548945 LSM4Q9Y4Z0 139 aaKnown RBP10.1□□□□□ -0.79
PTCH1-218ENST00000548945 SIRT4Q9Y6E7 314 aaPredicted RBP10.1□□□□□ -0.79
PTCH1-218ENST00000548945 U3KQK5 164 aa10.1□□□□□ -0.79
PTCH1-218ENST00000548945 TMEM30CPA0ZSE6 113 aa10.09□□□□□ -0.79
PTCH1-218ENST00000548945 IRGMA1A4Y4 181 aa10.09□□□□□ -0.79
PTCH1-218ENST00000548945 TRIM64CA6NLI5 447 aa10.09□□□□□ -0.79
PTCH1-218ENST00000548945 LINC01548A6NM66 108 aa10.09□□□□□ -0.79
PTCH1-218ENST00000548945 NCBP2LA6PVI3 153 aaKnown RBP10.09□□□□□ -0.79
PTCH1-218ENST00000548945 RPLP1P05386 114 aaKnown RBP10.09□□□□□ -0.79
PTCH1-218ENST00000548945 IL3RAP26951 378 aa10.09□□□□□ -0.79
PTCH1-218ENST00000548945 GBX2P52951 348 aaPredicted RBP10.09□□□□□ -0.79
PTCH1-218ENST00000548945 RAB40BQ12829 278 aa10.09□□□□□ -0.79
PTCH1-218ENST00000548945 GPR50Q13585 617 aa10.09□□□□□ -0.79
PTCH1-218ENST00000548945 LTC4SQ16873 150 aa10.09□□□□□ -0.79
PTCH1-218ENST00000548945 MOB3BQ86TA1 216 aa10.09□□□□□ -0.79
PTCH1-218ENST00000548945 SATL1Q86VE3 508 aa10.09□□□□□ -0.79
PTCH1-218ENST00000548945 Q8N9W7 124 aa10.09□□□□□ -0.79
PTCH1-218ENST00000548945 ST6GALNAC6Q969X2 333 aa10.09□□□□□ -0.79
PTCH1-218ENST00000548945 VCX3AQ9NNX9 186 aa10.09□□□□□ -0.79
PTCH1-218ENST00000548945 FKBP14Q9NWM8 211 aa10.09□□□□□ -0.79
PTCH1-218ENST00000548945 PAK1IP1Q9NWT1 392 aaPredicted RBP10.09□□□□□ -0.79
PTCH1-218ENST00000548945 ERVK13-1Q9NX77 482 aa10.09□□□□□ -0.79
PTCH1-218ENST00000548945 ST3GAL6Q9Y274 331 aa10.09□□□□□ -0.79
PTCH1-218ENST00000548945 PTGES3LE9PB15 166 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 E9PI62 339 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 C15orf65H3BRN8 121 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 TXNL1O43396 289 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 RGS10O43665 173 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 ORC5O43913 435 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 OR7C1O76099 320 aaPredicted RBP10.08□□□□□ -0.8
PTCH1-218ENST00000548945 MOSP00540 346 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 CD2P06729 351 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 RBM11P57052 281 aaKnown RBP10.08□□□□□ -0.8
PTCH1-218ENST00000548945 RAB25P57735 213 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 MPV17LQ2QL34 196 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 AHSA2Q719I0 299 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 PRSS48Q7RTY5 328 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 TMEM104Q8NE00 496 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 OR51A2Q8NGJ7 313 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 OR10K1Q8NGX5 313 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 OR52N1Q8NH53 320 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 RTN4IP1Q8WWV3 396 aaPredicted RBP10.08□□□□□ -0.8
PTCH1-218ENST00000548945 ARL11Q969Q4 196 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 DUX3Q96PT4 197 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 CHCHD6Q9BRQ6 235 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 JAM3Q9BX67 310 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 FAM192AQ9GZU8 254 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 METTL9Q9H1A3 318 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 AMBNQ9NP70 447 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 RAB9BQ9NP90 201 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 BATF3Q9NR55 127 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 PLSCR3Q9NRY6 295 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 MRPS18AQ9NVS2 196 aaKnown RBP10.08□□□□□ -0.8
PTCH1-218ENST00000548945 GFOD1Q9NXC2 390 aa10.08□□□□□ -0.8
PTCH1-218ENST00000548945 IGHV3-72A0A0B4J1Y9 119 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 TRAV39A0A0B4J263 110 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 A0A1W2PPE3 182 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 SDCBPO00560 298 aaPredicted RBP10.07□□□□□ -0.8
PTCH1-218ENST00000548945 ZNF780AO75290 641 aaPredicted RBP10.07□□□□□ -0.8
PTCH1-218ENST00000548945 HTR3BO95264 441 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 IGHG4P01861 327 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 IGF1P05019 195 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 CDK1P06493 297 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 REG1BP48304 166 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 LUMP51884 338 aaPredicted RBP10.07□□□□□ -0.8
PTCH1-218ENST00000548945 ZNF137PP52743 207 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 CFHR3Q02985 330 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 FHL3Q13643 280 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 TMEM30BQ3MIR4 351 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 CCDC58Q4VC31 144 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 LCNL1Q6ZST4 164 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 STX19Q8N4C7 294 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 SVOPQ8N4V2 548 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 FAM71E2Q8N5Q1 922 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 GPR148Q8TDV2 347 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 C4orf3Q8WVX3 66 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 GGHQ92820 318 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 S1PR3Q99500 378 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 RASL11BQ9BPW5 248 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 CCDC90BQ9GZT6 254 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 TMEM138Q9NPI0 162 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 TAS2R4Q9NYW5 299 aa10.07□□□□□ -0.8
PTCH1-218ENST00000548945 C3orf84H3BNL1 204 aa10.06□□□□□ -0.8
PTCH1-218ENST00000548945 GEMIN2O14893 280 aaKnown RBP10.06□□□□□ -0.8
PTCH1-218ENST00000548945 CDRT1O95170 752 aa10.06□□□□□ -0.8
PTCH1-218ENST00000548945 CSTBP04080 98 aaKnown RBP10.06□□□□□ -0.8
PTCH1-218ENST00000548945 OR5H8P0DN80 308 aa10.06□□□□□ -0.8
PTCH1-218ENST00000548945 ZNF93P35789 620 aaPredicted RBP10.06□□□□□ -0.8
PTCH1-218ENST00000548945 RPL5P46777 297 aaKnown RBP10.06□□□□□ -0.8
PTCH1-218ENST00000548945 ST3GAL4Q11206 333 aa10.06□□□□□ -0.8
PTCH1-218ENST00000548945 DEFB136Q30KP8 78 aa10.06□□□□□ -0.8
PTCH1-218ENST00000548945 NKAPLQ5M9Q1 402 aa10.06□□□□□ -0.8
PTCH1-218ENST00000548945 RPL22L1Q6P5R6 122 aaKnown RBP10.06□□□□□ -0.8
PTCH1-218ENST00000548945 ZNF497Q6ZNH5 498 aa10.06□□□□□ -0.8
PTCH1-218ENST00000548945 SLC25A48Q6ZT89 311 aaKnown RBP10.06□□□□□ -0.8
PTCH1-218ENST00000548945 SPARTQ8N0X7 666 aa10.06□□□□□ -0.8
PTCH1-218ENST00000548945 MYOZ3Q8TDC0 251 aa10.06□□□□□ -0.8
PTCH1-218ENST00000548945 RGP1Q92546 391 aaPredicted RBP10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms