RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 SIGIRRQ6IA17 410 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 ZNF826PQ6ZT77 177 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 WDR86Q86TI4 376 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 SLC38A6Q8IZM9 456 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 MS4A15Q8N5U1 240 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 SCCPDHQ8NBX0 429 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 OR52N4Q8NGI2 321 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 OR13C5Q8NGS8 318 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 OR13C9Q8NGT0 318 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 RGP1Q92546 391 aaPredicted RBP4.24□□□□□ -1.73
CLIP1-217ENST00000543205 TMEM106AQ96A25 262 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 BORCS8Q96FH0 119 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 PGLYRP3Q96LB9 341 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 TMED9Q9BVK6 235 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 OR51I2Q9H344 312 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 SLA2Q9H6Q3 261 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 NARFLQ9H6Q4 476 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 RNF7Q9UBF6 113 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 CKLFQ9UBR5 152 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 TMED3Q9Y3Q3 217 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 WIPI2Q9Y4P8 454 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 NPTNQ9Y639 398 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 TACC2O95359 2948 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 ARID1AO14497 2285 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 PPIAL4EA0A075B759 164 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 A0A087WXM4 84 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 TRBV5-5A0A0J9YX44 114 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 F8VVB4 439 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 F8VWA3 439 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 H7C1Q1 480 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 SULT1B1O43704 296 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 HCKP08631 526 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 PPIAL4FP0DN26 164 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 CD99P14209 185 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 PSMA1P25786 263 aaKnown RBP4.24□□□□□ -1.73
CLIP1-217ENST00000543205 PSMB9P28065 219 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 RBMXP38159 391 aaKnown RBP4.24□□□□□ -1.73
CLIP1-217ENST00000543205 MDH2P40926 338 aaKnown RBP4.24□□□□□ -1.73
CLIP1-217ENST00000543205 RBP2P50120 134 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 RPS11P62280 158 aaKnown RBP eCLIP4.24□□□□□ -1.73
CLIP1-217ENST00000543205 BTG1P62324 171 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 PPP3R1P63098 170 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 PNRC1Q12796 327 aaPredicted RBP4.24□□□□□ -1.73
CLIP1-217ENST00000543205 HNRNPA0Q13151 305 aaKnown RBP4.24□□□□□ -1.73
CLIP1-217ENST00000543205 TPBGQ13641 420 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 TRAM1Q15629 374 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 ANXA2RQ3ZCQ2 193 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 ARMCX4Q5H9R4 360 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 UBE2UQ5VVX9 321 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 HAGHLQ6PII5 290 aaPredicted RBP4.24□□□□□ -1.73
CLIP1-217ENST00000543205 WDR82Q6UXN9 313 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 FOXRED2Q8IWF2 684 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 C11orf53Q8IXP5 236 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 LRRC29Q8WV35 223 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 LHX4Q969G2 390 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 TMEM203Q969S6 136 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 RNF183Q96D59 192 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 CPNE2Q96FN4 548 aaPredicted RBP4.24□□□□□ -1.73
CLIP1-217ENST00000543205 OPALINQ96PE5 141 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 PARD6GQ9BYG4 376 aaPredicted RBP4.24□□□□□ -1.73
CLIP1-217ENST00000543205 FGF23Q9GZV9 251 aaPredicted RBP4.24□□□□□ -1.73
CLIP1-217ENST00000543205 TLNRD1Q9H1K6 362 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 VCX3AQ9NNX9 186 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 TAS2R4Q9NYW5 299 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 WDR83OSQ9Y284 106 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 POLDIP2Q9Y2S7 368 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 PPIAL4AQ9Y536 164 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 PRRC2AP48634 2157 aaKnown RBP4.24□□□□□ -1.73
CLIP1-217ENST00000543205 STAB1Q9NY15 2570 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 CSMD2Q7Z408 3487 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 NBEAL1Q6ZS30 2694 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 JMJD1CQ15652 2540 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 IGHV4-61A0A0C4DH41 118 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 IGKV1-9A0A0C4DH69 117 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 J3QT63 122 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 CYB5AP00167 134 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 NQO2P16083 231 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 TGFBR2P37173 567 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 RPS25P62851 125 aaKnown RBP4.23□□□□□ -1.73
CLIP1-217ENST00000543205 CFHR3Q02985 330 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 LOXL1Q08397 574 aaPredicted RBP4.23□□□□□ -1.73
CLIP1-217ENST00000543205 KCNJ8Q15842 424 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 NEDD8Q15843 81 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 MRPL23Q16540 153 aaKnown RBP4.23□□□□□ -1.73
CLIP1-217ENST00000543205 LINC01620Q4KN68 170 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 ACSM3Q53FZ2 586 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 GPR157Q5UAW9 335 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 CD164L2Q6UWJ8 174 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 Q6ZWC4 215 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 CEACAM19Q7Z692 300 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 SATL1Q86VE3 508 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 LRRC28Q86X40 367 aaPredicted RBP4.23□□□□□ -1.73
CLIP1-217ENST00000543205 ANGPTL5Q86XS5 388 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 FAM58AQ8N1B3 248 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 SPICQ8N5J4 248 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 MAPK1IP1LQ8NDC0 245 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 DEFB108BQ8NET1 73 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 OR1L4Q8NGR5 311 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 OR10Z1Q8NGY1 313 aa4.23□□□□□ -1.73
CLIP1-217ENST00000543205 SSMEM1Q8WWF3 244 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms