RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 FAM118AQ9NWS6 357 aa12.03□□□□□ -0.48
CLSTN3-213ENST00000541953 ZNF256Q9Y2P7 627 aaPredicted RBP12.03□□□□□ -0.48
CLSTN3-213ENST00000541953 MOSP00540 346 aa12.02□□□□□ -0.49
CLSTN3-213ENST00000541953 MT-ND4P03905 459 aa12.02□□□□□ -0.49
CLSTN3-213ENST00000541953 LIMS3P0CW19 117 aa12.02□□□□□ -0.49
CLSTN3-213ENST00000541953 LIMS4P0CW20 117 aa12.02□□□□□ -0.49
CLSTN3-213ENST00000541953 CD1BP29016 333 aa12.02□□□□□ -0.49
CLSTN3-213ENST00000541953 GP2P55259 537 aaKnown RBP12.02□□□□□ -0.49
CLSTN3-213ENST00000541953 CT45A1Q5HYN5 189 aa12.02□□□□□ -0.49
CLSTN3-213ENST00000541953 NHLRC3Q5JS37 347 aa12.02□□□□□ -0.49
CLSTN3-213ENST00000541953 CASC10Q5T4H9 136 aa12.02□□□□□ -0.49
CLSTN3-213ENST00000541953 ZNF497Q6ZNH5 498 aa12.02□□□□□ -0.49
CLSTN3-213ENST00000541953 OR52N1Q8NH53 320 aa12.02□□□□□ -0.49
CLSTN3-213ENST00000541953 CT45A3Q8NHU0 189 aa12.02□□□□□ -0.49
CLSTN3-213ENST00000541953 APH1BQ8WW43 257 aa12.02□□□□□ -0.49
CLSTN3-213ENST00000541953 ALX4Q9H161 411 aaPredicted RBP12.02□□□□□ -0.49
CLSTN3-213ENST00000541953 ING4Q9UNL4 249 aa12.02□□□□□ -0.49
CLSTN3-213ENST00000541953 WSB1Q9Y6I7 421 aa12.02□□□□□ -0.49
CLSTN3-213ENST00000541953 PLECQ15149 4684 aaKnown RBP12.02□□□□□ -0.49
CLSTN3-213ENST00000541953 C3orf84H3BNL1 204 aa12.01□□□□□ -0.49
CLSTN3-213ENST00000541953 I3L521 148 aa12.01□□□□□ -0.49
CLSTN3-213ENST00000541953 PPIFP30405 207 aaKnown RBP12.01□□□□□ -0.49
CLSTN3-213ENST00000541953 SOX6P35712 828 aa12.01□□□□□ -0.49
CLSTN3-213ENST00000541953 ZNF137PP52743 207 aa12.01□□□□□ -0.49
CLSTN3-213ENST00000541953 GNMTQ14749 295 aa12.01□□□□□ -0.49
CLSTN3-213ENST00000541953 ATAD3CQ5T2N8 411 aa12.01□□□□□ -0.49
CLSTN3-213ENST00000541953 DDI2Q5TDH0 399 aa12.01□□□□□ -0.49
CLSTN3-213ENST00000541953 SLC25A48Q6ZT89 311 aaKnown RBP12.01□□□□□ -0.49
CLSTN3-213ENST00000541953 OVCH2Q7RTZ1 564 aa12.01□□□□□ -0.49
CLSTN3-213ENST00000541953 C8orf31Q8N9H6 132 aa12.01□□□□□ -0.49
CLSTN3-213ENST00000541953 OR52M1Q8NGK5 317 aa12.01□□□□□ -0.49
CLSTN3-213ENST00000541953 OR1L1Q8NH94 360 aa12.01□□□□□ -0.49
CLSTN3-213ENST00000541953 TMEM106AQ96A25 262 aa12.01□□□□□ -0.49
CLSTN3-213ENST00000541953 RASL11BQ9BPW5 248 aa12.01□□□□□ -0.49
CLSTN3-213ENST00000541953 IL36GQ9NZH8 169 aa12.01□□□□□ -0.49
CLSTN3-213ENST00000541953 SORL1Q92673 2214 aa12.01□□□□□ -0.49
CLSTN3-213ENST00000541953 LY86O95711 162 aa12□□□□□ -0.49
CLSTN3-213ENST00000541953 LALBAP00709 142 aa12□□□□□ -0.49
CLSTN3-213ENST00000541953 IGF1P05019 195 aa12□□□□□ -0.49
CLSTN3-213ENST00000541953 RPSAP08865 295 aaKnown RBP12□□□□□ -0.49
CLSTN3-213ENST00000541953 GZMHP20718 246 aa12□□□□□ -0.49
CLSTN3-213ENST00000541953 VDAC1P21796 283 aa12□□□□□ -0.49
CLSTN3-213ENST00000541953 CHATP28329 748 aa12□□□□□ -0.49
CLSTN3-213ENST00000541953 ALDH3A2P51648 485 aa12□□□□□ -0.49
CLSTN3-213ENST00000541953 ADARB1P78563 741 aaKnown RBP12□□□□□ -0.49
CLSTN3-213ENST00000541953 NDPQ00604 133 aa12□□□□□ -0.49
CLSTN3-213ENST00000541953 LSAMPQ13449 338 aa12□□□□□ -0.49
CLSTN3-213ENST00000541953 SMN1Q16637 294 aaKnown RBP12□□□□□ -0.49
CLSTN3-213ENST00000541953 CBR4Q8N4T8 237 aa12□□□□□ -0.49
CLSTN3-213ENST00000541953 ZNF491Q8N8L2 437 aa12□□□□□ -0.49
CLSTN3-213ENST00000541953 OR4K15Q8NH41 348 aa12□□□□□ -0.49
CLSTN3-213ENST00000541953 RHOXF1Q8NHV9 184 aa12□□□□□ -0.49
CLSTN3-213ENST00000541953 MUC7Q8TAX7 377 aa12□□□□□ -0.49
CLSTN3-213ENST00000541953 CASTOR1Q8WTX7 329 aa12□□□□□ -0.49
CLSTN3-213ENST00000541953 RCHY1Q96PM5 261 aa12□□□□□ -0.49
CLSTN3-213ENST00000541953 ZMAT5Q9UDW3 170 aaKnown RBP12□□□□□ -0.49
CLSTN3-213ENST00000541953 ZNF107Q9UII5 783 aaPredicted RBP12□□□□□ -0.49
CLSTN3-213ENST00000541953 GMPPBQ9Y5P6 360 aa12□□□□□ -0.49
CLSTN3-213ENST00000541953 AIPO00170 330 aa11.99□□□□□ -0.49
CLSTN3-213ENST00000541953 ATP6V0E1O15342 81 aa11.99□□□□□ -0.49
CLSTN3-213ENST00000541953 RRP9O43818 475 aaKnown RBP11.99□□□□□ -0.49
CLSTN3-213ENST00000541953 ORC5O43913 435 aa11.99□□□□□ -0.49
CLSTN3-213ENST00000541953 SNRPBP14678 240 aaKnown RBP11.99□□□□□ -0.49
CLSTN3-213ENST00000541953 RCC1P18754 421 aaPredicted RBP11.99□□□□□ -0.49
CLSTN3-213ENST00000541953 ZNF93P35789 620 aaPredicted RBP11.99□□□□□ -0.49
CLSTN3-213ENST00000541953 SLC22A6Q4U2R8 563 aa11.99□□□□□ -0.49
CLSTN3-213ENST00000541953 SYT6Q5T7P8 510 aaPredicted RBP11.99□□□□□ -0.49
CLSTN3-213ENST00000541953 OR2G6Q5TZ20 316 aa11.99□□□□□ -0.49
CLSTN3-213ENST00000541953 ODF3L1Q8IXM7 274 aa11.99□□□□□ -0.49
CLSTN3-213ENST00000541953 PRR18Q8N4B5 295 aa11.99□□□□□ -0.49
CLSTN3-213ENST00000541953 NEK7Q8TDX7 302 aa11.99□□□□□ -0.49
CLSTN3-213ENST00000541953 DCUN1D4Q92564 292 aa11.99□□□□□ -0.49
CLSTN3-213ENST00000541953 GON7Q9BXV9 100 aa11.99□□□□□ -0.49
CLSTN3-213ENST00000541953 METTL9Q9H1A3 318 aa11.99□□□□□ -0.49
CLSTN3-213ENST00000541953 ISYNA1Q9NPH2 558 aa11.99□□□□□ -0.49
CLSTN3-213ENST00000541953 RCC2Q9P258 522 aaKnown RBP11.99□□□□□ -0.49
CLSTN3-213ENST00000541953 FBXO7Q9Y3I1 522 aa11.99□□□□□ -0.49
CLSTN3-213ENST00000541953 TRAV8-7A0A075B6U6 113 aa11.98□□□□□ -0.49
CLSTN3-213ENST00000541953 MAGEB3O15480 346 aa11.98□□□□□ -0.49
CLSTN3-213ENST00000541953 SOX15O60248 233 aa11.98□□□□□ -0.49
CLSTN3-213ENST00000541953 IGLV1-40P01703 118 aa11.98□□□□□ -0.49
CLSTN3-213ENST00000541953 HBZP02008 142 aa11.98□□□□□ -0.49
CLSTN3-213ENST00000541953 ETV1P50549 477 aa11.98□□□□□ -0.49
CLSTN3-213ENST00000541953 GBX2P52951 348 aaPredicted RBP11.98□□□□□ -0.49
CLSTN3-213ENST00000541953 SLURP1P55000 103 aa11.98□□□□□ -0.49
CLSTN3-213ENST00000541953 MMDQ15546 238 aa11.98□□□□□ -0.49
CLSTN3-213ENST00000541953 MPV17LQ2QL34 196 aa11.98□□□□□ -0.49
CLSTN3-213ENST00000541953 OR1N2Q8NGR9 330 aa11.98□□□□□ -0.49
CLSTN3-213ENST00000541953 GPR148Q8TDV2 347 aa11.98□□□□□ -0.49
CLSTN3-213ENST00000541953 CPNE2Q96FN4 548 aaPredicted RBP11.98□□□□□ -0.49
CLSTN3-213ENST00000541953 ZNF184Q99676 751 aaPredicted RBP11.98□□□□□ -0.49
CLSTN3-213ENST00000541953 SLC29A1Q99808 456 aa11.98□□□□□ -0.49
CLSTN3-213ENST00000541953 MRPL20Q9BYC9 149 aaKnown RBP11.98□□□□□ -0.49
CLSTN3-213ENST00000541953 GNG12Q9UBI6 72 aa11.98□□□□□ -0.49
CLSTN3-213ENST00000541953 ZNF580Q9UK33 172 aa11.98□□□□□ -0.49
CLSTN3-213ENST00000541953 SMAD5-AS1Q9Y6J3 95 aa11.98□□□□□ -0.49
CLSTN3-213ENST00000541953 IGHV7-81A0A0B4J1V7 117 aa11.97□□□□□ -0.49
CLSTN3-213ENST00000541953 TRIM64CA6NLI5 447 aa11.97□□□□□ -0.49
CLSTN3-213ENST00000541953 FADS2O95864 444 aaKnown RBP11.97□□□□□ -0.49
CLSTN3-213ENST00000541953 CSTBP04080 98 aaKnown RBP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms