RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 AURKAIP1Q9NWT8 199 aaPredicted RBP11.56□□□□□ -0.56
PTPN1-202ENST00000541713 TRBV23-1A0A0A0MS06 115 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 TAGLN2P37802 199 aaKnown RBP11.56□□□□□ -0.56
PTPN1-202ENST00000541713 SULT1A1P50225 295 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 CLDN18P56856 261 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 ZNF528Q3MIS6 628 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 FAM58AQ8N1B3 248 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 PLK3Q9H4B4 646 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 PARP11Q9NR21 331 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 HSF4Q9ULV5 492 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 CARHSP1Q9Y2V2 147 aaKnown RBP11.56□□□□□ -0.56
PTPN1-202ENST00000541713 ANKRD11Q6UB99 2663 aaPredicted RBP11.55□□□□□ -0.56
PTPN1-202ENST00000541713 H7C1Q1 480 aa11.55□□□□□ -0.56
PTPN1-202ENST00000541713 YIF1AO95070 293 aa11.55□□□□□ -0.56
PTPN1-202ENST00000541713 DANCRP0C864 163 aa11.55□□□□□ -0.56
PTPN1-202ENST00000541713 RTL6Q6ICC9 239 aa11.55□□□□□ -0.56
PTPN1-202ENST00000541713 UBAC2Q8NBM4 344 aa11.55□□□□□ -0.56
PTPN1-202ENST00000541713 LILRB1Q8NHL6 650 aaPredicted RBP11.55□□□□□ -0.56
PTPN1-202ENST00000541713 DCTN5Q9BTE1 182 aa11.55□□□□□ -0.56
PTPN1-202ENST00000541713 Q9N2K0 584 aa11.55□□□□□ -0.56
PTPN1-202ENST00000541713 RELNP78509 3460 aa11.55□□□□□ -0.56
PTPN1-202ENST00000541713 OTOGLQ3ZCN5 2332 aa11.55□□□□□ -0.56
PTPN1-202ENST00000541713 UBE2KP61086 200 aa11.55□□□□□ -0.56
PTPN1-202ENST00000541713 RPL23AP62750 156 aaKnown RBP11.55□□□□□ -0.56
PTPN1-202ENST00000541713 HABP2Q14520 560 aaPredicted RBP11.55□□□□□ -0.56
PTPN1-202ENST00000541713 REPIN1Q9BWE0 567 aaKnown RBP11.55□□□□□ -0.56
PTPN1-202ENST00000541713 PGLYRP1O75594 196 aaPredicted RBP11.55□□□□□ -0.56
PTPN1-202ENST00000541713 OR2C1O95371 312 aa11.55□□□□□ -0.56
PTPN1-202ENST00000541713 CD5P06127 495 aa11.55□□□□□ -0.56
PTPN1-202ENST00000541713 MMP9P14780 707 aa11.55□□□□□ -0.56
PTPN1-202ENST00000541713 COL8A2P25067 703 aa11.55□□□□□ -0.56
PTPN1-202ENST00000541713 CEACAM6P40199 344 aa11.55□□□□□ -0.56
PTPN1-202ENST00000541713 SLC10A1Q14973 349 aa11.55□□□□□ -0.56
PTPN1-202ENST00000541713 OR8B8Q15620 311 aa11.55□□□□□ -0.56
PTPN1-202ENST00000541713 ABLIM2Q6H8Q1 611 aa11.55□□□□□ -0.56
PTPN1-202ENST00000541713 WDR5BQ86VZ2 330 aa11.55□□□□□ -0.56
PTPN1-202ENST00000541713 APOBEC3DQ96AK3 386 aaPredicted RBP11.55□□□□□ -0.56
PTPN1-202ENST00000541713 GPR146Q96CH1 333 aa11.55□□□□□ -0.56
PTPN1-202ENST00000541713 ADAMTS20P59510 1910 aa11.55□□□□□ -0.56
PTPN1-202ENST00000541713 CD55P08174 381 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 AESQ08117 197 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 LILRB2Q8N423 598 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 TMED3Q9Y3Q3 217 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 TRAV24A0A0B4J272 114 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 RRP8O43159 456 aaKnown RBP11.54□□□□□ -0.56
PTPN1-202ENST00000541713 NDUFA6P56556 154 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 RND3P61587 244 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 CEACAM21Q3KPI0 293 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 PRAMEF6Q5VXH4 476 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 FOXL2NBQ6ZUU3 175 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 UBALD2Q8IYN6 164 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 TAAR9Q96RI9 348 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 TRIB1Q96RU8 372 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 C1QTNF5Q9BXJ0 243 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 DLL3Q9NYJ7 618 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 DUSP13Q9UII6 198 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 POMT1Q9Y6A1 747 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 AKAP13Q12802 2813 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 NKX2-8O15522 239 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 CLDN1O95832 211 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 TMEM42Q69YG0 159 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 TMEM211Q6ICI0 200 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 PLPPR1Q8TBJ4 325 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 ZNF665Q9H7R5 613 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 ABI3Q9P2A4 366 aa11.54□□□□□ -0.56
PTPN1-202ENST00000541713 CHD3Q12873 2000 aaKnown RBP11.53□□□□□ -0.56
PTPN1-202ENST00000541713 LYL1P12980 280 aa11.53□□□□□ -0.56
PTPN1-202ENST00000541713 GABRA2P47869 451 aa11.53□□□□□ -0.56
PTPN1-202ENST00000541713 KPTNQ9Y664 436 aa11.53□□□□□ -0.56
PTPN1-202ENST00000541713 CACNA1BQ00975 2339 aa11.53□□□□□ -0.56
PTPN1-202ENST00000541713 PQLC2LA1A4F0 135 aa11.53□□□□□ -0.56
PTPN1-202ENST00000541713 S100A9P06702 114 aaKnown RBP11.53□□□□□ -0.56
PTPN1-202ENST00000541713 UBE2NP61088 152 aaKnown RBP11.53□□□□□ -0.56
PTPN1-202ENST00000541713 FGF12P61328 243 aa11.53□□□□□ -0.56
PTPN1-202ENST00000541713 HES3Q5TGS1 186 aa11.53□□□□□ -0.56
PTPN1-202ENST00000541713 OR1J1Q8NGS3 322 aa11.53□□□□□ -0.56
PTPN1-202ENST00000541713 GALNT14Q96FL9 552 aa11.53□□□□□ -0.56
PTPN1-202ENST00000541713 SLC35B3Q9H1N7 401 aa11.53□□□□□ -0.56
PTPN1-202ENST00000541713 PTAFRP25105 342 aa11.52□□□□□ -0.56
PTPN1-202ENST00000541713 TRA2AQ13595 282 aaKnown RBP eCLIP11.52□□□□□ -0.569e-6■□□□□ 10.6
PTPN1-202ENST00000541713 OR52L2PQ8NGH6 319 aa11.52□□□□□ -0.56
PTPN1-202ENST00000541713 MRGPRDQ8TDS7 321 aa11.52□□□□□ -0.56
PTPN1-202ENST00000541713 SDSLQ96GA7 329 aa11.52□□□□□ -0.56
PTPN1-202ENST00000541713 PLEKHF2Q9H8W4 249 aa11.52□□□□□ -0.56
PTPN1-202ENST00000541713 CUL9Q8IWT3 2517 aa11.52□□□□□ -0.56
PTPN1-202ENST00000541713 SPTBN1Q01082 2364 aaKnown RBP11.52□□□□□ -0.56
PTPN1-202ENST00000541713 RBFOX3A6NFN3 312 aa11.52□□□□□ -0.57
PTPN1-202ENST00000541713 ECI1P42126 302 aa11.52□□□□□ -0.57
PTPN1-202ENST00000541713 OR3A1P47881 315 aa11.52□□□□□ -0.57
PTPN1-202ENST00000541713 PBDC1Q9BVG4 233 aa11.52□□□□□ -0.57
PTPN1-202ENST00000541713 TMPRSS5Q9H3S3 457 aa11.52□□□□□ -0.57
PTPN1-202ENST00000541713 CDH20Q9HBT6 801 aa11.52□□□□□ -0.57
PTPN1-202ENST00000541713 UBE2L5PA0A1B0GUS4 154 aa11.52□□□□□ -0.57
PTPN1-202ENST00000541713 H3BQ15 152 aa11.52□□□□□ -0.57
PTPN1-202ENST00000541713 G6PCP35575 357 aa11.52□□□□□ -0.57
PTPN1-202ENST00000541713 SOX8P57073 446 aa11.52□□□□□ -0.57
PTPN1-202ENST00000541713 OR4D5Q8NGN0 318 aa11.52□□□□□ -0.57
PTPN1-202ENST00000541713 OR1L1Q8NH94 360 aa11.52□□□□□ -0.57
PTPN1-202ENST00000541713 SCGB1C1Q8TD33 95 aa11.52□□□□□ -0.57
PTPN1-202ENST00000541713 C10orf35Q96D05 121 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms