RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 MPIG6BO95866 241 aa11.35□□□□□ -0.59
USP28-209ENST00000540925 IGHV3-7P01780 117 aa11.35□□□□□ -0.59
USP28-209ENST00000540925 AMY1AP04745 511 aa11.35□□□□□ -0.59
USP28-209ENST00000540925 AMY2AP04746 511 aa11.35□□□□□ -0.59
USP28-209ENST00000540925 CD24P25063 80 aa11.35□□□□□ -0.59
USP28-209ENST00000540925 BRS3P32247 399 aa11.35□□□□□ -0.59
USP28-209ENST00000540925 BLCAPP62952 87 aa11.35□□□□□ -0.59
USP28-209ENST00000540925 DIAPH2-AS1Q14236 149 aa11.35□□□□□ -0.59
USP28-209ENST00000540925 HABP2Q14520 560 aaPredicted RBP11.35□□□□□ -0.59
USP28-209ENST00000540925 FAM53AQ6NSI3 398 aaPredicted RBP11.35□□□□□ -0.59
USP28-209ENST00000540925 CCDC144NLQ6NUI1 221 aa11.35□□□□□ -0.59
USP28-209ENST00000540925 DTX3Q8N9I9 347 aa11.35□□□□□ -0.59
USP28-209ENST00000540925 ZNF439Q8NDP4 499 aa11.35□□□□□ -0.59
USP28-209ENST00000540925 KCNG3Q8TAE7 436 aa11.35□□□□□ -0.59
USP28-209ENST00000540925 MRPL30Q8TCC3 161 aaKnown RBP11.35□□□□□ -0.59
USP28-209ENST00000540925 NEK7Q8TDX7 302 aa11.35□□□□□ -0.59
USP28-209ENST00000540925 ARL11Q969Q4 196 aa11.35□□□□□ -0.59
USP28-209ENST00000540925 ST6GALNAC6Q969X2 333 aa11.35□□□□□ -0.59
USP28-209ENST00000540925 WNT10AQ9GZT5 417 aa11.35□□□□□ -0.59
USP28-209ENST00000540925 GFOD1Q9NXC2 390 aa11.35□□□□□ -0.59
USP28-209ENST00000540925 AMMECR1Q9Y4X0 333 aaPredicted RBP11.35□□□□□ -0.59
USP28-209ENST00000540925 SHISA3A0PJX4 238 aa11.34□□□□□ -0.59
USP28-209ENST00000540925 TIMM23O14925 209 aa11.34□□□□□ -0.59
USP28-209ENST00000540925 LDLRAD4O15165 306 aa11.34□□□□□ -0.59
USP28-209ENST00000540925 OR2F2O95006 317 aa11.34□□□□□ -0.59
USP28-209ENST00000540925 RCC1P18754 421 aaPredicted RBP11.34□□□□□ -0.59
USP28-209ENST00000540925 MADCAM1Q13477 382 aa11.34□□□□□ -0.59
USP28-209ENST00000540925 HERPUD1Q15011 391 aa11.34□□□□□ -0.59
USP28-209ENST00000540925 LTC4SQ16873 150 aa11.34□□□□□ -0.59
USP28-209ENST00000540925 TMEM30BQ3MIR4 351 aa11.34□□□□□ -0.59
USP28-209ENST00000540925 UBE2UQ5VVX9 321 aa11.34□□□□□ -0.59
USP28-209ENST00000540925 Q6ZPA2 131 aa11.34□□□□□ -0.59
USP28-209ENST00000540925 OR2W3Q7Z3T1 314 aa11.34□□□□□ -0.59
USP28-209ENST00000540925 ZNF554Q86TJ5 538 aa11.34□□□□□ -0.59
USP28-209ENST00000540925 THNSL2Q86YJ6 484 aa11.34□□□□□ -0.59
USP28-209ENST00000540925 FAM89BQ8N5H3 189 aa11.34□□□□□ -0.59
USP28-209ENST00000540925 KLHDC1Q8N7A1 406 aa11.34□□□□□ -0.59
USP28-209ENST00000540925 UBALD1Q8TB05 177 aa11.34□□□□□ -0.59
USP28-209ENST00000540925 RBM14Q96PK6 669 aaKnown RBP11.34□□□□□ -0.59
USP28-209ENST00000540925 SULT4A1Q9BR01 284 aa11.34□□□□□ -0.59
USP28-209ENST00000540925 OCSTAMPQ9BR26 566 aa11.34□□□□□ -0.59
USP28-209ENST00000540925 NICN1Q9BSH3 213 aa11.34□□□□□ -0.59
USP28-209ENST00000540925 TMEM59Q9BXS4 323 aa11.34□□□□□ -0.59
USP28-209ENST00000540925 LPAR5Q9H1C0 372 aa11.34□□□□□ -0.59
USP28-209ENST00000540925 DNAH3Q8TD57 4116 aa11.33□□□□□ -0.59
USP28-209ENST00000540925 A0A1W2PPE3 182 aa11.33□□□□□ -0.6
USP28-209ENST00000540925 UBE2QL1A1L167 161 aa11.33□□□□□ -0.6
USP28-209ENST00000540925 SDCBPO00560 298 aaPredicted RBP11.33□□□□□ -0.6
USP28-209ENST00000540925 NAPSAO96009 420 aa11.33□□□□□ -0.6
USP28-209ENST00000540925 HBZP02008 142 aa11.33□□□□□ -0.6
USP28-209ENST00000540925 CALRP27797 417 aaKnown RBP11.33□□□□□ -0.6
USP28-209ENST00000540925 GNG10P50151 68 aa11.33□□□□□ -0.6
USP28-209ENST00000540925 RAB7AP51149 207 aa11.33□□□□□ -0.6
USP28-209ENST00000540925 ARHGDIBP52566 201 aa11.33□□□□□ -0.6
USP28-209ENST00000540925 ZNF137PP52743 207 aa11.33□□□□□ -0.6
USP28-209ENST00000540925 ZNF816Q0VGE8 651 aaPredicted RBP11.33□□□□□ -0.6
USP28-209ENST00000540925 C6orf183Q5T699 404 aa11.33□□□□□ -0.6
USP28-209ENST00000540925 TRAT1Q6PIZ9 186 aa11.33□□□□□ -0.6
USP28-209ENST00000540925 SPARTQ8N0X7 666 aa11.33□□□□□ -0.6
USP28-209ENST00000540925 OR8H3Q8N146 312 aa11.33□□□□□ -0.6
USP28-209ENST00000540925 OR4K15Q8NH41 348 aa11.33□□□□□ -0.6
USP28-209ENST00000540925 OR1L1Q8NH94 360 aa11.33□□□□□ -0.6
USP28-209ENST00000540925 TOMM40LQ969M1 308 aa11.33□□□□□ -0.6
USP28-209ENST00000540925 RPEQ96AT9 228 aa11.33□□□□□ -0.6
USP28-209ENST00000540925 YTHDF1Q9BYJ9 559 aaKnown RBP11.33□□□□□ -0.6
USP28-209ENST00000540925 PRSS22Q9GZN4 317 aa11.33□□□□□ -0.6
USP28-209ENST00000540925 AK6Q9Y3D8 172 aaKnown RBP11.33□□□□□ -0.6
USP28-209ENST00000540925 TRAV1-2A0A0B4J238 106 aa11.32□□□□□ -0.6
USP28-209ENST00000540925 TRDV1A0A1B0GX56 115 aa11.32□□□□□ -0.6
USP28-209ENST00000540925 M0QZ24 198 aa11.32□□□□□ -0.6
USP28-209ENST00000540925 SLC31A2O15432 143 aa11.32□□□□□ -0.6
USP28-209ENST00000540925 GALP22466 123 aa11.32□□□□□ -0.6
USP28-209ENST00000540925 MNDAP41218 407 aa11.32□□□□□ -0.6
USP28-209ENST00000540925 ZNF134P52741 427 aa11.32□□□□□ -0.6
USP28-209ENST00000540925 EBI3Q14213 229 aa11.32□□□□□ -0.6
USP28-209ENST00000540925 P2RY14Q15391 338 aa11.32□□□□□ -0.6
USP28-209ENST00000540925 ZNF880Q6PDB4 577 aa11.32□□□□□ -0.6
USP28-209ENST00000540925 SLC25A48Q6ZT89 311 aaKnown RBP11.32□□□□□ -0.6
USP28-209ENST00000540925 C6orf201Q7Z4U5 140 aa11.32□□□□□ -0.6
USP28-209ENST00000540925 DRAM1Q8N682 238 aa11.32□□□□□ -0.6
USP28-209ENST00000540925 SLC25A33Q9BSK2 321 aa11.32□□□□□ -0.6
USP28-209ENST00000540925 Q9H521 79 aa11.32□□□□□ -0.6
USP28-209ENST00000540925 TAF9BQ9HBM6 251 aa11.32□□□□□ -0.6
USP28-209ENST00000540925 TRAPPC2LQ9UL33 140 aa11.32□□□□□ -0.6
USP28-209ENST00000540925 PRKDCP78527 4128 aaKnown RBP11.32□□□□□ -0.6
USP28-209ENST00000540925 IGHV3-43A0A0B4J1X8 118 aa11.31□□□□□ -0.6
USP28-209ENST00000540925 HSD17B6O14756 317 aa11.31□□□□□ -0.6
USP28-209ENST00000540925 SPINT2O43291 252 aa11.31□□□□□ -0.6
USP28-209ENST00000540925 TSPAN15O95858 294 aa11.31□□□□□ -0.6
USP28-209ENST00000540925 IGHV3-43DP0DP04 118 aa11.31□□□□□ -0.6
USP28-209ENST00000540925 ARSBP15848 533 aa11.31□□□□□ -0.6
USP28-209ENST00000540925 TMEM50BP56557 158 aa11.31□□□□□ -0.6
USP28-209ENST00000540925 HMGN3Q15651 99 aa11.31□□□□□ -0.6
USP28-209ENST00000540925 RAB11BQ15907 218 aa11.31□□□□□ -0.6
USP28-209ENST00000540925 TMEM95Q3KNT9 176 aa11.31□□□□□ -0.6
USP28-209ENST00000540925 CT45A1Q5HYN5 189 aa11.31□□□□□ -0.6
USP28-209ENST00000540925 NKAPLQ5M9Q1 402 aa11.31□□□□□ -0.6
USP28-209ENST00000540925 LY6G6FQ5SQ64 297 aa11.31□□□□□ -0.6
USP28-209ENST00000540925 STEAP3Q658P3 488 aa11.31□□□□□ -0.6
USP28-209ENST00000540925 C5orf24Q7Z6I8 188 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms