RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 RPS27AP62979 156 aaKnown RBP12.2□□□□□ -0.46
CPSF1-208ENST00000532560 CBX3Q13185 183 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 UNC119Q13432 240 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 RBM39Q14498 530 aaKnown RBP12.2□□□□□ -0.46
CPSF1-208ENST00000532560 RAB11BQ15907 218 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 MINOS1Q5TGZ0 78 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 SIGIRRQ6IA17 410 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 ZNF497Q6ZNH5 498 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 OR2W3Q7Z3T1 314 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 LHFPL4Q7Z7J7 247 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 RTN4RL2Q86UN3 420 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 MRGPRDQ8TDS7 321 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 KIRREL1Q96J84 757 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 TM2D1Q9BX74 207 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 KCNK15Q9H427 330 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 RNF167Q9H6Y7 350 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 TNFRSF19Q9NS68 423 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 ADAM30Q9UKF2 790 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 VPREB3Q9UKI3 123 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 MINOS1-NBL1R4GNA1 71 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 FAM181BA6NEQ2 426 aa12.19□□□□□ -0.46
CPSF1-208ENST00000532560 NPIPB11E5RHQ5 1161 aa12.19□□□□□ -0.46
CPSF1-208ENST00000532560 PDCD5O14737 125 aa12.19□□□□□ -0.46
CPSF1-208ENST00000532560 CA11O75493 328 aa12.19□□□□□ -0.46
CPSF1-208ENST00000532560 ARSBP15848 533 aa12.19□□□□□ -0.46
CPSF1-208ENST00000532560 OMGP23515 440 aa12.19□□□□□ -0.46
CPSF1-208ENST00000532560 P2RY14Q15391 338 aa12.19□□□□□ -0.46
CPSF1-208ENST00000532560 LRRC75BQ2VPJ9 315 aa12.19□□□□□ -0.46
CPSF1-208ENST00000532560 OR10K2Q6IF99 312 aa12.19□□□□□ -0.46
CPSF1-208ENST00000532560 BRICD5Q6PL45 260 aa12.19□□□□□ -0.46
CPSF1-208ENST00000532560 GAPTQ8N292 157 aa12.19□□□□□ -0.46
CPSF1-208ENST00000532560 OR10A7Q8NGE5 316 aa12.19□□□□□ -0.46
CPSF1-208ENST00000532560 OR4P4Q8NGL7 312 aa12.19□□□□□ -0.46
CPSF1-208ENST00000532560 ZNF596Q8TC21 504 aa12.19□□□□□ -0.46
CPSF1-208ENST00000532560 ACOT12Q8WYK0 555 aa12.19□□□□□ -0.46
CPSF1-208ENST00000532560 V9GY05 133 aa12.19□□□□□ -0.46
CPSF1-208ENST00000532560 SHISA3A0PJX4 238 aa12.18□□□□□ -0.46
CPSF1-208ENST00000532560 AIPO00170 330 aa12.18□□□□□ -0.46
CPSF1-208ENST00000532560 CTDSP2O14595 271 aa12.18□□□□□ -0.46
CPSF1-208ENST00000532560 GPR137BO60478 399 aa12.18□□□□□ -0.46
CPSF1-208ENST00000532560 MT-ND4P03905 459 aa12.18□□□□□ -0.46
CPSF1-208ENST00000532560 SDC2P34741 201 aa12.18□□□□□ -0.46
CPSF1-208ENST00000532560 SSTR5P35346 364 aa12.18□□□□□ -0.46
CPSF1-208ENST00000532560 EIF2B2P49770 351 aaKnown RBP12.18□□□□□ -0.46
CPSF1-208ENST00000532560 FOXL1Q12952 345 aa12.18□□□□□ -0.46
CPSF1-208ENST00000532560 LDLRAD2Q5SZI1 272 aa12.18□□□□□ -0.46
CPSF1-208ENST00000532560 C22orf42Q6IC83 251 aa12.18□□□□□ -0.46
CPSF1-208ENST00000532560 MZT2AQ6P582 158 aa12.18□□□□□ -0.46
CPSF1-208ENST00000532560 BAIAP2L2Q6UXY1 529 aa12.18□□□□□ -0.46
CPSF1-208ENST00000532560 AKAP14Q86UN6 197 aa12.18□□□□□ -0.46
CPSF1-208ENST00000532560 ABHD12Q8N2K0 398 aa12.18□□□□□ -0.46
CPSF1-208ENST00000532560 MALSU1Q96EH3 234 aa12.18□□□□□ -0.46
CPSF1-208ENST00000532560 ZNF286AQ9HBT8 521 aa12.18□□□□□ -0.46
CPSF1-208ENST00000532560 IDI2-AS1Q9NZ38 188 aa12.18□□□□□ -0.46
CPSF1-208ENST00000532560 FBLN5Q9UBX5 448 aa12.18□□□□□ -0.46
CPSF1-208ENST00000532560 V9GYH0 126 aa12.18□□□□□ -0.46
CPSF1-208ENST00000532560 FAM172BPA6NC97 362 aa12.17□□□□□ -0.46
CPSF1-208ENST00000532560 H3BUX3 64 aa12.17□□□□□ -0.46
CPSF1-208ENST00000532560 RGS5O15539 181 aa12.17□□□□□ -0.46
CPSF1-208ENST00000532560 ORC5O43913 435 aa12.17□□□□□ -0.46
CPSF1-208ENST00000532560 IGLV1-47P01700 117 aa12.17□□□□□ -0.46
CPSF1-208ENST00000532560 TRAPPC2P0DI81 140 aa12.17□□□□□ -0.46
CPSF1-208ENST00000532560 TRAPPC2BP0DI82 140 aa12.17□□□□□ -0.46
CPSF1-208ENST00000532560 GZMHP20718 246 aa12.17□□□□□ -0.46
CPSF1-208ENST00000532560 CHATP28329 748 aa12.17□□□□□ -0.46
CPSF1-208ENST00000532560 OR10A3P58181 314 aa12.17□□□□□ -0.46
CPSF1-208ENST00000532560 AWAT1Q58HT5 328 aa12.17□□□□□ -0.46
CPSF1-208ENST00000532560 C12orf54Q6X4T0 127 aa12.17□□□□□ -0.46
CPSF1-208ENST00000532560 DYNAPQ8N1N2 210 aa12.17□□□□□ -0.46
CPSF1-208ENST00000532560 FAM3DQ96BQ1 224 aa12.17□□□□□ -0.46
CPSF1-208ENST00000532560 NEDD4LQ96PU5 975 aa12.17□□□□□ -0.46
CPSF1-208ENST00000532560 SSX3Q99909 188 aa12.17□□□□□ -0.46
CPSF1-208ENST00000532560 NICN1Q9BSH3 213 aa12.17□□□□□ -0.46
CPSF1-208ENST00000532560 STEAP1Q9UHE8 339 aa12.17□□□□□ -0.46
CPSF1-208ENST00000532560 TRAV39A0A0B4J263 110 aa12.16□□□□□ -0.46
CPSF1-208ENST00000532560 IFITM5A6NNB3 132 aa12.16□□□□□ -0.46
CPSF1-208ENST00000532560 C15orf65H3BRN8 121 aa12.16□□□□□ -0.46
CPSF1-208ENST00000532560 LDLRAD4O15165 306 aa12.16□□□□□ -0.46
CPSF1-208ENST00000532560 NDUFA7O95182 113 aa12.16□□□□□ -0.46
CPSF1-208ENST00000532560 CRYBA1P05813 215 aa12.16□□□□□ -0.46
CPSF1-208ENST00000532560 RAB3BP20337 219 aa12.16□□□□□ -0.46
CPSF1-208ENST00000532560 PAX6P26367 422 aa12.16□□□□□ -0.46
CPSF1-208ENST00000532560 HTR1DP28221 377 aa12.16□□□□□ -0.46
CPSF1-208ENST00000532560 CLDN12P56749 244 aa12.16□□□□□ -0.46
CPSF1-208ENST00000532560 ASAH1Q13510 395 aa12.16□□□□□ -0.46
CPSF1-208ENST00000532560 HLA-DRB5Q30154 266 aa12.16□□□□□ -0.46
CPSF1-208ENST00000532560 NKAPLQ5M9Q1 402 aa12.16□□□□□ -0.46
CPSF1-208ENST00000532560 C6orf183Q5T699 404 aa12.16□□□□□ -0.46
CPSF1-208ENST00000532560 TRAT1Q6PIZ9 186 aa12.16□□□□□ -0.46
CPSF1-208ENST00000532560 CCBE1Q6UXH8 406 aaPredicted RBP12.16□□□□□ -0.46
CPSF1-208ENST00000532560 SNX29P2Q8IUI4 249 aa12.16□□□□□ -0.46
CPSF1-208ENST00000532560 FAM89BQ8N5H3 189 aa12.16□□□□□ -0.46
CPSF1-208ENST00000532560 OR51D1Q8NGF3 324 aa12.16□□□□□ -0.46
CPSF1-208ENST00000532560 OR9G1Q8NH87 305 aa12.16□□□□□ -0.46
CPSF1-208ENST00000532560 CREB3L1Q96BA8 519 aa12.16□□□□□ -0.46
CPSF1-208ENST00000532560 KCTD12Q96CX2 325 aaKnown RBP12.16□□□□□ -0.46
CPSF1-208ENST00000532560 SDHCQ99643 169 aaPredicted RBP12.16□□□□□ -0.46
CPSF1-208ENST00000532560 URM1Q9BTM9 101 aaKnown RBP12.16□□□□□ -0.46
CPSF1-208ENST00000532560 SRRQ9GZT4 340 aa12.16□□□□□ -0.46
CPSF1-208ENST00000532560 LPAR5Q9H1C0 372 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms