RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 SYT6Q5T7P8 510 aaPredicted RBP16.5■□□□□ 0.23
VPS28-206ENST00000526734 ZNF367Q7RTV3 350 aa16.5■□□□□ 0.23
VPS28-206ENST00000526734 CCDC107Q8WV48 283 aa16.5■□□□□ 0.23
VPS28-206ENST00000526734 LEAP2Q969E1 77 aa16.5■□□□□ 0.23
VPS28-206ENST00000526734 NEDD4LQ96PU5 975 aa16.5■□□□□ 0.23
VPS28-206ENST00000526734 MGLLQ99685 303 aa16.5■□□□□ 0.23
VPS28-206ENST00000526734 OCSTAMPQ9BR26 566 aa16.5■□□□□ 0.23
VPS28-206ENST00000526734 TMEM59Q9BXS4 323 aa16.5■□□□□ 0.23
VPS28-206ENST00000526734 ACOT13Q9NPJ3 140 aa16.5■□□□□ 0.23
VPS28-206ENST00000526734 PKD1L1Q8TDX9 2849 aa16.49■□□□□ 0.23
VPS28-206ENST00000526734 A0A1W2PPI3 338 aa16.49■□□□□ 0.23
VPS28-206ENST00000526734 MRPS14O60783 128 aaKnown RBP16.49■□□□□ 0.23
VPS28-206ENST00000526734 FBXO24O75426 580 aa16.49■□□□□ 0.23
VPS28-206ENST00000526734 BPNT1O95861 308 aa16.49■□□□□ 0.23
VPS28-206ENST00000526734 VSIG8P0DPA2 414 aa16.49■□□□□ 0.23
VPS28-206ENST00000526734 BLCAPP62952 87 aa16.49■□□□□ 0.23
VPS28-206ENST00000526734 RPS27AP62979 156 aaKnown RBP16.49■□□□□ 0.23
VPS28-206ENST00000526734 ZNF816Q0VGE8 651 aaPredicted RBP16.49■□□□□ 0.23
VPS28-206ENST00000526734 HABP2Q14520 560 aaPredicted RBP16.49■□□□□ 0.23
VPS28-206ENST00000526734 TMEM203Q969S6 136 aa16.49■□□□□ 0.23
VPS28-206ENST00000526734 FAM46BQ96A09 425 aa16.49■□□□□ 0.23
VPS28-206ENST00000526734 Q9H521 79 aa16.49■□□□□ 0.23
VPS28-206ENST00000526734 KCNIP1Q9NZI2 227 aa16.49■□□□□ 0.23
VPS28-206ENST00000526734 MOB4Q9Y3A3 225 aa16.49■□□□□ 0.23
VPS28-206ENST00000526734 C12orf77C9JDV5 145 aa16.48■□□□□ 0.23
VPS28-206ENST00000526734 HSD17B6O14756 317 aa16.48■□□□□ 0.23
VPS28-206ENST00000526734 TSPAN15O95858 294 aa16.48■□□□□ 0.23
VPS28-206ENST00000526734 IGHV3-7P01780 117 aa16.48■□□□□ 0.23
VPS28-206ENST00000526734 GAPDHP04406 335 aaKnown RBP16.48■□□□□ 0.23
VPS28-206ENST00000526734 LPLP06858 475 aa16.48■□□□□ 0.23
VPS28-206ENST00000526734 CD24P25063 80 aa16.48■□□□□ 0.23
VPS28-206ENST00000526734 LOXL3P58215 753 aa16.48■□□□□ 0.23
VPS28-206ENST00000526734 GABARAPL2P60520 117 aa16.48■□□□□ 0.23
VPS28-206ENST00000526734 RPS25P62851 125 aaKnown RBP16.48■□□□□ 0.23
VPS28-206ENST00000526734 SIGIRRQ6IA17 410 aa16.48■□□□□ 0.23
VPS28-206ENST00000526734 OR4K15Q8NH41 348 aa16.48■□□□□ 0.23
VPS28-206ENST00000526734 WIPF2Q8TF74 440 aaPredicted RBP16.48■□□□□ 0.23
VPS28-206ENST00000526734 TM2D1Q9BX74 207 aa16.48■□□□□ 0.23
VPS28-206ENST00000526734 MBNL3Q9NUK0 354 aaKnown RBP16.48■□□□□ 0.23
VPS28-206ENST00000526734 LRRC42Q9Y546 428 aa16.48■□□□□ 0.23
VPS28-206ENST00000526734 TXNL1O43396 289 aa16.47■□□□□ 0.23
VPS28-206ENST00000526734 CHATP28329 748 aa16.47■□□□□ 0.23
VPS28-206ENST00000526734 PSMD7P51665 324 aa16.47■□□□□ 0.23
VPS28-206ENST00000526734 STEAP3Q658P3 488 aa16.47■□□□□ 0.23
VPS28-206ENST00000526734 TMEM91Q6ZNR0 172 aa16.47■□□□□ 0.23
VPS28-206ENST00000526734 OR2W3Q7Z3T1 314 aa16.47■□□□□ 0.23
VPS28-206ENST00000526734 OR56B4Q8NH76 319 aa16.47■□□□□ 0.23
VPS28-206ENST00000526734 GNG12Q9UBI6 72 aa16.47■□□□□ 0.23
VPS28-206ENST00000526734 TRRAPQ9Y4A5 3859 aa16.46■□□□□ 0.23
VPS28-206ENST00000526734 UBE2QL1A1L167 161 aa16.46■□□□□ 0.23
VPS28-206ENST00000526734 TMEM14DPA8MWL7 114 aa16.46■□□□□ 0.23
VPS28-206ENST00000526734 CCRL2O00421 344 aa16.46■□□□□ 0.23
VPS28-206ENST00000526734 SLC17A2O00624 439 aa16.46■□□□□ 0.23
VPS28-206ENST00000526734 HBZP02008 142 aa16.46■□□□□ 0.23
VPS28-206ENST00000526734 SNRNP70P08621 437 aaKnown RBP16.46■□□□□ 0.23
VPS28-206ENST00000526734 NDUFA11Q86Y39 141 aa16.46■□□□□ 0.23
VPS28-206ENST00000526734 DRAM1Q8N682 238 aa16.46■□□□□ 0.23
VPS28-206ENST00000526734 URM1Q9BTM9 101 aaKnown RBP16.46■□□□□ 0.23
VPS28-206ENST00000526734 PLGRKTQ9HBL7 147 aa16.46■□□□□ 0.23
VPS28-206ENST00000526734 TET2Q6N021 2002 aaPredicted RBP16.46■□□□□ 0.23
VPS28-206ENST00000526734 FGF16O43320 207 aa16.45■□□□□ 0.22
VPS28-206ENST00000526734 TMEM11P17152 192 aa16.45■□□□□ 0.22
VPS28-206ENST00000526734 MAP2K4P45985 399 aa16.45■□□□□ 0.22
VPS28-206ENST00000526734 ZNF137PP52743 207 aa16.45■□□□□ 0.22
VPS28-206ENST00000526734 EMX1Q04741 257 aaPredicted RBP16.45■□□□□ 0.22
VPS28-206ENST00000526734 ABCA11PQ4W5N1 156 aa16.45■□□□□ 0.22
VPS28-206ENST00000526734 NKAPLQ5M9Q1 402 aa16.45■□□□□ 0.22
VPS28-206ENST00000526734 SLC25A48Q6ZT89 311 aaKnown RBP16.45■□□□□ 0.22
VPS28-206ENST00000526734 IZUMO1Q8IYV9 350 aa16.45■□□□□ 0.22
VPS28-206ENST00000526734 SVOPQ8N4V2 548 aa16.45■□□□□ 0.22
VPS28-206ENST00000526734 MRPL30Q8TCC3 161 aaKnown RBP16.45■□□□□ 0.22
VPS28-206ENST00000526734 TAF9BQ9HBM6 251 aa16.45■□□□□ 0.22
VPS28-206ENST00000526734 JPT1Q9UK76 154 aa16.45■□□□□ 0.22
VPS28-206ENST00000526734 IGHV1-3A0A0C4DH29 117 aa16.44■□□□□ 0.22
VPS28-206ENST00000526734 ARSBP15848 533 aa16.44■□□□□ 0.22
VPS28-206ENST00000526734 RCC1P18754 421 aaPredicted RBP16.44■□□□□ 0.22
VPS28-206ENST00000526734 CALRP27797 417 aaKnown RBP16.44■□□□□ 0.22
VPS28-206ENST00000526734 QRFPP83859 136 aa16.44■□□□□ 0.22
VPS28-206ENST00000526734 HTD2P86397 168 aa16.44■□□□□ 0.22
VPS28-206ENST00000526734 UNC119Q13432 240 aa16.44■□□□□ 0.22
VPS28-206ENST00000526734 EBI3Q14213 229 aa16.44■□□□□ 0.22
VPS28-206ENST00000526734 HES1Q14469 280 aa16.44■□□□□ 0.22
VPS28-206ENST00000526734 RAB11BQ15907 218 aa16.44■□□□□ 0.22
VPS28-206ENST00000526734 OR10K2Q6IF99 312 aa16.44■□□□□ 0.22
VPS28-206ENST00000526734 Q6ZS46 218 aa16.44■□□□□ 0.22
VPS28-206ENST00000526734 MOB1BQ7L9L4 216 aa16.44■□□□□ 0.22
VPS28-206ENST00000526734 C11orf44Q8N8P7 122 aa16.44■□□□□ 0.22
VPS28-206ENST00000526734 ZNF439Q8NDP4 499 aa16.44■□□□□ 0.22
VPS28-206ENST00000526734 UBALD1Q8TB05 177 aa16.44■□□□□ 0.22
VPS28-206ENST00000526734 ST6GALNAC6Q969X2 333 aa16.44■□□□□ 0.22
VPS28-206ENST00000526734 WNK1Q9H4A3 2382 aa16.44■□□□□ 0.22
VPS28-206ENST00000526734 IGHV3-43A0A0B4J1X8 118 aa16.43■□□□□ 0.22
VPS28-206ENST00000526734 A0A1W2PPE3 182 aa16.43■□□□□ 0.22
VPS28-206ENST00000526734 RGS11O94810 467 aa16.43■□□□□ 0.22
VPS28-206ENST00000526734 IGHV3-43DP0DP04 118 aa16.43■□□□□ 0.22
VPS28-206ENST00000526734 GALP22466 123 aa16.43■□□□□ 0.22
VPS28-206ENST00000526734 FABP5Q01469 135 aa16.43■□□□□ 0.22
VPS28-206ENST00000526734 LY6G6FQ5SQ64 297 aa16.43■□□□□ 0.22
VPS28-206ENST00000526734 PRR18Q8N4B5 295 aa16.43■□□□□ 0.22
VPS28-206ENST00000526734 OR1L1Q8NH94 360 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms