RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 KRTAP10-3P60369 221 aa13.07□□□□□ -0.32
LSM1-205ENST00000523511 HES1Q14469 280 aa13.07□□□□□ -0.32
LSM1-205ENST00000523511 INSL4Q14641 139 aa13.07□□□□□ -0.32
LSM1-205ENST00000523511 TBCEQ15813 527 aaPredicted RBP13.07□□□□□ -0.32
LSM1-205ENST00000523511 FAM27D1Q5T7N8 215 aa13.07□□□□□ -0.32
LSM1-205ENST00000523511 STEAP3Q658P3 488 aa13.07□□□□□ -0.32
LSM1-205ENST00000523511 LINC00311Q8N616 119 aa13.07□□□□□ -0.32
LSM1-205ENST00000523511 SGCDQ92629 289 aa13.07□□□□□ -0.32
LSM1-205ENST00000523511 LEAP2Q969E1 77 aa13.07□□□□□ -0.32
LSM1-205ENST00000523511 SLC25A33Q9BSK2 321 aa13.07□□□□□ -0.32
LSM1-205ENST00000523511 YTHDF1Q9BYJ9 559 aaKnown RBP13.07□□□□□ -0.32
LSM1-205ENST00000523511 RIMS4Q9H426 269 aaPredicted RBP13.07□□□□□ -0.32
LSM1-205ENST00000523511 ZNF702PQ9H963 129 aa13.07□□□□□ -0.32
LSM1-205ENST00000523511 GFOD1Q9NXC2 390 aa13.07□□□□□ -0.32
LSM1-205ENST00000523511 ABRACLQ9P1F3 81 aa13.07□□□□□ -0.32
LSM1-205ENST00000523511 UBE2QL1A1L167 161 aa13.06□□□□□ -0.32
LSM1-205ENST00000523511 C15orf65H3BRN8 121 aa13.06□□□□□ -0.32
LSM1-205ENST00000523511 CCRL2O00421 344 aa13.06□□□□□ -0.32
LSM1-205ENST00000523511 SLC22A1O15245 554 aa13.06□□□□□ -0.32
LSM1-205ENST00000523511 RGS11O94810 467 aa13.06□□□□□ -0.32
LSM1-205ENST00000523511 IGHV3-7P01780 117 aa13.06□□□□□ -0.32
LSM1-205ENST00000523511 VSIG8P0DPA2 414 aa13.06□□□□□ -0.32
LSM1-205ENST00000523511 CD24P25063 80 aa13.06□□□□□ -0.32
LSM1-205ENST00000523511 CALRP27797 417 aaKnown RBP13.06□□□□□ -0.32
LSM1-205ENST00000523511 GABARAPL2P60520 117 aa13.06□□□□□ -0.32
LSM1-205ENST00000523511 BLCAPP62952 87 aa13.06□□□□□ -0.32
LSM1-205ENST00000523511 RPS27AP62979 156 aaKnown RBP13.06□□□□□ -0.32
LSM1-205ENST00000523511 NKAPLQ5M9Q1 402 aa13.06□□□□□ -0.32
LSM1-205ENST00000523511 CENPVQ7Z7K6 275 aaPredicted RBP13.06□□□□□ -0.32
LSM1-205ENST00000523511 GAPTQ8N292 157 aa13.06□□□□□ -0.32
LSM1-205ENST00000523511 PRR18Q8N4B5 295 aa13.06□□□□□ -0.32
LSM1-205ENST00000523511 OR4K15Q8NH41 348 aa13.06□□□□□ -0.32
LSM1-205ENST00000523511 PLEKHJ1Q9NW61 149 aa13.06□□□□□ -0.32
LSM1-205ENST00000523511 ZNF581Q9P0T4 197 aa13.06□□□□□ -0.32
LSM1-205ENST00000523511 SLC17A2O00624 439 aa13.05□□□□□ -0.32
LSM1-205ENST00000523511 TXNL1O43396 289 aa13.05□□□□□ -0.32
LSM1-205ENST00000523511 CD37P11049 281 aa13.05□□□□□ -0.32
LSM1-205ENST00000523511 MAP2K4P45985 399 aa13.05□□□□□ -0.32
LSM1-205ENST00000523511 GP2P55259 537 aaKnown RBP13.05□□□□□ -0.32
LSM1-205ENST00000523511 RPS25P62851 125 aaKnown RBP13.05□□□□□ -0.32
LSM1-205ENST00000523511 RAB11BQ15907 218 aa13.05□□□□□ -0.32
LSM1-205ENST00000523511 TMEM91Q6ZNR0 172 aa13.05□□□□□ -0.32
LSM1-205ENST00000523511 OR2W3Q7Z3T1 314 aa13.05□□□□□ -0.32
LSM1-205ENST00000523511 MOB3BQ86TA1 216 aa13.05□□□□□ -0.32
LSM1-205ENST00000523511 CFHR4Q92496 578 aa13.05□□□□□ -0.32
LSM1-205ENST00000523511 GALMQ96C23 342 aa13.05□□□□□ -0.32
LSM1-205ENST00000523511 TM2D1Q9BX74 207 aa13.05□□□□□ -0.32
LSM1-205ENST00000523511 TAF9BQ9HBM6 251 aa13.05□□□□□ -0.32
LSM1-205ENST00000523511 CHMP1AQ9HD42 196 aaPredicted RBP13.05□□□□□ -0.32
LSM1-205ENST00000523511 OR2S2Q9NQN1 319 aa13.05□□□□□ -0.32
LSM1-205ENST00000523511 C12orf77C9JDV5 145 aa13.04□□□□□ -0.32
LSM1-205ENST00000523511 HSD17B6O14756 317 aa13.04□□□□□ -0.32
LSM1-205ENST00000523511 DENRO43583 198 aaKnown RBP13.04□□□□□ -0.32
LSM1-205ENST00000523511 FBXO24O75426 580 aa13.04□□□□□ -0.32
LSM1-205ENST00000523511 HBZP02008 142 aa13.04□□□□□ -0.32
LSM1-205ENST00000523511 TMEM11P17152 192 aa13.04□□□□□ -0.32
LSM1-205ENST00000523511 JUNBP17275 347 aaPredicted RBP13.04□□□□□ -0.32
LSM1-205ENST00000523511 MYL9P24844 172 aa13.04□□□□□ -0.32
LSM1-205ENST00000523511 BLVRBP30043 206 aaPredicted RBP13.04□□□□□ -0.32
LSM1-205ENST00000523511 ZNF816Q0VGE8 651 aaPredicted RBP13.04□□□□□ -0.32
LSM1-205ENST00000523511 SERTAD4Q9NUC0 356 aa13.04□□□□□ -0.32
LSM1-205ENST00000523511 MBNL3Q9NUK0 354 aaKnown RBP13.04□□□□□ -0.32
LSM1-205ENST00000523511 MGAT4AQ9UM21 535 aa13.04□□□□□ -0.32
LSM1-205ENST00000523511 MOB4Q9Y3A3 225 aa13.04□□□□□ -0.32
LSM1-205ENST00000523511 AK6Q9Y3D8 172 aaKnown RBP13.04□□□□□ -0.32
LSM1-205ENST00000523511 V9GY05 133 aa13.04□□□□□ -0.32
LSM1-205ENST00000523511 FAM90A9PA6NNJ1 464 aa13.03□□□□□ -0.32
LSM1-205ENST00000523511 TMEM14DPA8MWL7 114 aa13.03□□□□□ -0.32
LSM1-205ENST00000523511 SNRNP70P08621 437 aaKnown RBP13.03□□□□□ -0.32
LSM1-205ENST00000523511 RCC1P18754 421 aaPredicted RBP13.03□□□□□ -0.32
LSM1-205ENST00000523511 GALP22466 123 aa13.03□□□□□ -0.32
LSM1-205ENST00000523511 LOXL3P58215 753 aa13.03□□□□□ -0.32
LSM1-205ENST00000523511 HTD2P86397 168 aa13.03□□□□□ -0.32
LSM1-205ENST00000523511 FABP5Q01469 135 aa13.03□□□□□ -0.32
LSM1-205ENST00000523511 HABP2Q14520 560 aaPredicted RBP13.03□□□□□ -0.32
LSM1-205ENST00000523511 ABCA11PQ4W5N1 156 aa13.03□□□□□ -0.32
LSM1-205ENST00000523511 OR10K2Q6IF99 312 aa13.03□□□□□ -0.32
LSM1-205ENST00000523511 DRAM1Q8N682 238 aa13.03□□□□□ -0.32
LSM1-205ENST00000523511 OR56B4Q8NH76 319 aa13.03□□□□□ -0.32
LSM1-205ENST00000523511 FCGR1BQ92637 280 aa13.03□□□□□ -0.32
LSM1-205ENST00000523511 FAAP24Q9BTP7 215 aa13.03□□□□□ -0.32
LSM1-205ENST00000523511 IGHV3-43A0A0B4J1X8 118 aa13.02□□□□□ -0.33
LSM1-205ENST00000523511 A0A1W2PPE3 182 aa13.02□□□□□ -0.33
LSM1-205ENST00000523511 OPN1MWP04001 364 aa13.02□□□□□ -0.33
LSM1-205ENST00000523511 OPN1MW2P0DN77 364 aa13.02□□□□□ -0.33
LSM1-205ENST00000523511 OPN1MW3P0DN78 364 aa13.02□□□□□ -0.33
LSM1-205ENST00000523511 IGHV3-43DP0DP04 118 aa13.02□□□□□ -0.33
LSM1-205ENST00000523511 CHATP28329 748 aa13.02□□□□□ -0.33
LSM1-205ENST00000523511 MRPS15P82914 257 aaKnown RBP13.02□□□□□ -0.33
LSM1-205ENST00000523511 C9orf152Q5JTZ5 239 aa13.02□□□□□ -0.33
LSM1-205ENST00000523511 SIGIRRQ6IA17 410 aa13.02□□□□□ -0.33
LSM1-205ENST00000523511 SLC25A48Q6ZT89 311 aaKnown RBP13.02□□□□□ -0.33
LSM1-205ENST00000523511 TGIF2LXQ8IUE1 241 aa13.02□□□□□ -0.33
LSM1-205ENST00000523511 C11orf44Q8N8P7 122 aa13.02□□□□□ -0.33
LSM1-205ENST00000523511 OR56B1Q8NGI3 324 aa13.02□□□□□ -0.33
LSM1-205ENST00000523511 OR2T10Q8NGZ9 312 aa13.02□□□□□ -0.33
LSM1-205ENST00000523511 FAM110DQ8TAY7 271 aaPredicted RBP13.02□□□□□ -0.33
LSM1-205ENST00000523511 WNT10AQ9GZT5 417 aa13.02□□□□□ -0.33
LSM1-205ENST00000523511 STEAP1Q9UHE8 339 aa13.02□□□□□ -0.33
LSM1-205ENST00000523511 JPT1Q9UK76 154 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms