RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 SPPL2BQ8TCT7 592 aa3.94□□□□□ -1.78
NUP54-215ENST00000514313 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.94□□□□□ -1.78
NUP54-215ENST00000514313 CMTM5Q96DZ9 223 aa3.94□□□□□ -1.78
NUP54-215ENST00000514313 NSRP1Q9H0G5 558 aaKnown RBP3.94□□□□□ -1.78
NUP54-215ENST00000514313 TMEM216Q9P0N5 145 aa3.94□□□□□ -1.78
NUP54-215ENST00000514313 U3KQK5 164 aa3.94□□□□□ -1.78
NUP54-215ENST00000514313 F5H768 121 aa3.93□□□□□ -1.78
NUP54-215ENST00000514313 NIPSNAP2O75323 286 aa3.93□□□□□ -1.78
NUP54-215ENST00000514313 ARL6IP5O75915 188 aa3.93□□□□□ -1.78
NUP54-215ENST00000514313 IGHV3-53P01767 116 aa3.93□□□□□ -1.78
NUP54-215ENST00000514313 CD5P06127 495 aa3.93□□□□□ -1.78
NUP54-215ENST00000514313 UGT2B7P16662 529 aa3.93□□□□□ -1.78
NUP54-215ENST00000514313 GADD45AP24522 165 aa3.93□□□□□ -1.78
NUP54-215ENST00000514313 CDC34P49427 236 aaPredicted RBP3.93□□□□□ -1.78
NUP54-215ENST00000514313 BIKQ13323 160 aa3.93□□□□□ -1.78
NUP54-215ENST00000514313 BCL2A1Q16548 175 aa3.93□□□□□ -1.78
NUP54-215ENST00000514313 YIPF7Q8N8F6 280 aa3.93□□□□□ -1.78
NUP54-215ENST00000514313 MNS1Q8NEH6 495 aa3.93□□□□□ -1.78
NUP54-215ENST00000514313 KRTAP4-4Q9BYR3 166 aa3.93□□□□□ -1.78
NUP54-215ENST00000514313 PARVGQ9HBI0 331 aa3.93□□□□□ -1.78
NUP54-215ENST00000514313 KCNIP2Q9NS61 270 aa3.93□□□□□ -1.78
NUP54-215ENST00000514313 R4GN34 69 aa3.93□□□□□ -1.78
NUP54-215ENST00000514313 COL1A2P08123 1366 aa3.92□□□□□ -1.78
NUP54-215ENST00000514313 CD99P14209 185 aa3.92□□□□□ -1.78
NUP54-215ENST00000514313 CDKL4Q5MAI5 379 aa3.92□□□□□ -1.78
NUP54-215ENST00000514313 SPATA31B1PQ5VZV4 182 aa3.92□□□□□ -1.78
NUP54-215ENST00000514313 RPRMLQ8N4K4 120 aa3.92□□□□□ -1.78
NUP54-215ENST00000514313 C3orf22Q8N5N4 141 aa3.92□□□□□ -1.78
NUP54-215ENST00000514313 OR11G2Q8NGC1 345 aa3.92□□□□□ -1.78
NUP54-215ENST00000514313 APOBEC3DQ96AK3 386 aaPredicted RBP3.92□□□□□ -1.78
NUP54-215ENST00000514313 SPANXB1Q9NS25 103 aaPredicted RBP3.92□□□□□ -1.78
NUP54-215ENST00000514313 FAM206AQ9NX38 181 aa3.92□□□□□ -1.78
NUP54-215ENST00000514313 TAS2R1Q9NYW7 299 aa3.92□□□□□ -1.78
NUP54-215ENST00000514313 OR5V1Q9UGF6 321 aa3.92□□□□□ -1.78
NUP54-215ENST00000514313 YLPM1P49750 1951 aaKnown RBP3.92□□□□□ -1.78
NUP54-215ENST00000514313 ARAP3Q8WWN8 1544 aa3.91□□□□□ -1.78
NUP54-215ENST00000514313 M0QYV0 167 aa3.91□□□□□ -1.78
NUP54-215ENST00000514313 AZIN1O14977 448 aa3.91□□□□□ -1.78
NUP54-215ENST00000514313 BIRC5O15392 142 aa3.91□□□□□ -1.78
NUP54-215ENST00000514313 ZW10O43264 779 aa3.91□□□□□ -1.78
NUP54-215ENST00000514313 GUSBP08236 651 aa3.91□□□□□ -1.78
NUP54-215ENST00000514313 PSKH1P11801 424 aa3.91□□□□□ -1.78
NUP54-215ENST00000514313 GABARAPL2P60520 117 aa3.91□□□□□ -1.78
NUP54-215ENST00000514313 LGALSLQ3ZCW2 172 aaPredicted RBP3.91□□□□□ -1.78
NUP54-215ENST00000514313 TRMT12Q53H54 448 aaKnown RBP3.91□□□□□ -1.78
NUP54-215ENST00000514313 KRTAP5-4Q6L8H1 288 aa3.91□□□□□ -1.78
NUP54-215ENST00000514313 CYHR1Q6ZMK1 362 aa3.91□□□□□ -1.78
NUP54-215ENST00000514313 ZBTB8OSQ8IWT0 167 aa3.91□□□□□ -1.78
NUP54-215ENST00000514313 CPNE9Q8IYJ1 553 aa3.91□□□□□ -1.78
NUP54-215ENST00000514313 TNFAIP8L1Q8WVP5 186 aa3.91□□□□□ -1.78
NUP54-215ENST00000514313 GALMQ96C23 342 aa3.91□□□□□ -1.78
NUP54-215ENST00000514313 SMIM19Q96E16 107 aa3.91□□□□□ -1.78
NUP54-215ENST00000514313 LCE3DQ9BYE3 92 aa3.91□□□□□ -1.78
NUP54-215ENST00000514313 GLS2Q9UI32 602 aa3.91□□□□□ -1.78
NUP54-215ENST00000514313 DNMT1P26358 1616 aaKnown RBP3.91□□□□□ -1.78
NUP54-215ENST00000514313 IGHV3OR15-7A0A075B7D8 119 aa3.9□□□□□ -1.79
NUP54-215ENST00000514313 B4DEV8 164 aa3.9□□□□□ -1.79
NUP54-215ENST00000514313 PSMG1O95456 288 aa3.9□□□□□ -1.79
NUP54-215ENST00000514313 IGHMP01871 453 aa3.9□□□□□ -1.79
NUP54-215ENST00000514313 GYPCP04921 128 aa3.9□□□□□ -1.79
NUP54-215ENST00000514313 COX5BP10606 129 aa3.9□□□□□ -1.79
NUP54-215ENST00000514313 CTLA4P16410 223 aa3.9□□□□□ -1.79
NUP54-215ENST00000514313 PSMA1P25786 263 aaKnown RBP3.9□□□□□ -1.79
NUP54-215ENST00000514313 SLC9A3R2Q15599 337 aa3.9□□□□□ -1.79
NUP54-215ENST00000514313 KRTAP25-1Q3LHN0 102 aa3.9□□□□□ -1.79
NUP54-215ENST00000514313 Q6ZQT7 251 aa3.9□□□□□ -1.79
NUP54-215ENST00000514313 BPIFB6Q8NFQ5 453 aa3.9□□□□□ -1.79
NUP54-215ENST00000514313 ZNF721Q8TF20 911 aa3.9□□□□□ -1.79
NUP54-215ENST00000514313 TRIB3Q96RU7 358 aa3.9□□□□□ -1.79
NUP54-215ENST00000514313 SLC22A4Q9H015 551 aa3.9□□□□□ -1.79
NUP54-215ENST00000514313 ARL6Q9H0F7 186 aa3.9□□□□□ -1.79
NUP54-215ENST00000514313 MS4A6AQ9H2W1 248 aa3.9□□□□□ -1.79
NUP54-215ENST00000514313 ZNF286AQ9HBT8 521 aa3.9□□□□□ -1.79
NUP54-215ENST00000514313 ZNF443Q9Y2A4 671 aaPredicted RBP3.9□□□□□ -1.79
NUP54-215ENST00000514313 PHLDA3Q9Y5J5 127 aa3.9□□□□□ -1.79
NUP54-215ENST00000514313 V9GYY5 206 aaPredicted RBP3.9□□□□□ -1.79
NUP54-215ENST00000514313 C15orf65H3BRN8 121 aa3.89□□□□□ -1.79
NUP54-215ENST00000514313 RNASE2P10153 161 aaKnown RBP3.89□□□□□ -1.79
NUP54-215ENST00000514313 CRABP2P29373 138 aa3.89□□□□□ -1.79
NUP54-215ENST00000514313 FOXA1P55317 472 aa3.89□□□□□ -1.79
NUP54-215ENST00000514313 MGAT3Q09327 533 aa3.89□□□□□ -1.79
NUP54-215ENST00000514313 MESTQ5EB52 335 aa3.89□□□□□ -1.79
NUP54-215ENST00000514313 FAM19A5Q7Z5A7 132 aaPredicted RBP3.89□□□□□ -1.79
NUP54-215ENST00000514313 TMEM75Q8N9X5 138 aa3.89□□□□□ -1.79
NUP54-215ENST00000514313 MBOAT7Q96N66 472 aa3.89□□□□□ -1.79
NUP54-215ENST00000514313 MROQ9BYG7 248 aa3.89□□□□□ -1.79
NUP54-215ENST00000514313 GTSF1LQ9H1H1 148 aa3.89□□□□□ -1.79
NUP54-215ENST00000514313 UBQLN4Q9NRR5 601 aa3.89□□□□□ -1.79
NUP54-215ENST00000514313 LINC00527Q9UJ94 153 aa3.89□□□□□ -1.79
NUP54-215ENST00000514313 RPUSD1Q9UJJ7 312 aaKnown RBP3.89□□□□□ -1.79
NUP54-215ENST00000514313 OR51B4Q9Y5P0 310 aa3.89□□□□□ -1.79
NUP54-215ENST00000514313 TNKS1BP1Q9C0C2 1729 aaKnown RBP3.89□□□□□ -1.79
NUP54-215ENST00000514313 SEC16AO15027 2179 aa3.89□□□□□ -1.79
NUP54-215ENST00000514313 ADGRL1O94910 1474 aa3.88□□□□□ -1.79
NUP54-215ENST00000514313 IGKV1-12A0A0C4DH73 117 aa3.88□□□□□ -1.79
NUP54-215ENST00000514313 F5H5T6 163 aa3.88□□□□□ -1.79
NUP54-215ENST00000514313 KLHL2O95198 593 aa3.88□□□□□ -1.79
NUP54-215ENST00000514313 DEXIO95424 95 aa3.88□□□□□ -1.79
NUP54-215ENST00000514313 IGKV1-17P01599 117 aa3.88□□□□□ -1.79
NUP54-215ENST00000514313 IGKV1D-12P01611 117 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms