RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 PRDX4Q13162 271 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 SHBQ15464 509 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 RND1Q92730 232 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 C14orf144Q96I85 54 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 C20orf141Q9NUB4 165 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 OR5AC2Q9NZP5 309 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 YBX2Q9Y2T7 364 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 LMO7DNF2Z398 122 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 RBFOX2O43251 390 aaKnown RBP eCLIP7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 PPICP45877 212 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 ZNF660Q6AZW8 331 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 HMGCLL1Q8TB92 370 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 ZG16BQ96DA0 208 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 RTL8AQ9BWD3 113 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 TIMM10BQ9Y5J6 103 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 PTPRFP10586 1907 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 CTXND1A0A1B0GTU2 59 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 C5orf49A4QMS7 147 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 ATXN7O15265 892 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 SRSF10O75494 262 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 ZNF137PP52743 207 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 ATP5IP56385 69 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 NUTF2P61970 127 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 DUSP2Q05923 314 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 OR10AG1Q8NH19 301 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 SIGLEC7Q9Y286 467 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 A0A1W2PRS3 328 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 MEX3AA1L020 520 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 H3BUT2 72 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 FGF2P09038 288 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 ANKRD34CP0C6C1 535 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 HOXA5P20719 270 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 CLDN18P56856 261 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 PRICKLE4Q2TBC4 344 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 WDR38Q5JTN6 314 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 RNF165Q6ZSG1 346 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 DNASE2BQ8WZ79 361 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 CLDN23Q96B33 292 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 ARHGAP5-AS1Q96IT6 56 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 MRGPRX4Q96LA9 322 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 LAT2Q9GZY6 243 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 MRPL18Q9H0U6 180 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 CACNG5Q9UF02 275 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 LRP12Q9Y561 859 aa7.7□□□□□ -1.18
LIMCH1-218ENST00000513024 C3orf85A0A1B0GTC6 90 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 IGLV3-25P01717 112 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 SP1P08047 785 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 CXCL2P19875 107 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 CDAP32320 146 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 GNB1P62873 340 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 PDPNQ86YL7 162 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 OR1L1Q8NH94 360 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 TNFRSF14Q92956 283 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 PLPPR2Q96GM1 343 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 ZNF48Q96MX3 618 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 RAB1BQ9H0U4 201 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 AURKAIP1Q9NWT8 199 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 PHIPQ8WWQ0 1821 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 K7EQS6 105 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 IFITM3Q01628 133 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 C20orf196Q8IYI0 205 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 OSR2Q8N2R0 312 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 AMER3Q8N944 861 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 CCL4L1Q8NHW4 92 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 OTOSQ8NHW6 89 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 LRRC29Q8WV35 223 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 BEX4Q9NWD9 120 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 DIDO1Q9BTC0 2240 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 IGHV3-15A0A0B4J1V0 119 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 FAM90A27PA6NNH2 459 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 CTAG2O75638 210 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 COL9A1P20849 921 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 SLC35B1P78383 322 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 TCTN1Q2MV58 587 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 FNDC7Q5VTL7 733 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 TGIF2LYQ8IUE0 185 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 OR4S2Q8NH73 311 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 GALMQ96C23 342 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 MRGPRX1Q96LB2 322 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 SEC16AO15027 2179 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 TMEM272A0A1B0GTI8 110 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 KIAA0040Q15053 153 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 RSPO4Q2I0M5 234 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 ANKRD37Q7Z713 158 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 TBC1D26Q86UD7 250 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 GVQW1Q8N7I0 195 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 C8orf44Q96CB5 159 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 ZNF257Q9Y2Q1 563 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 RGPD3A6NKT7 1758 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 RGPD4Q7Z3J3 1758 aa7.69□□□□□ -1.18
LIMCH1-218ENST00000513024 MCM3APO60318 1980 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 TRBV5-4A0A0C4DH59 114 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 MARCH11A6NNE9 402 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 A8MWL6 223 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 GCM2O75603 506 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 ZNF735P0CB33 412 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 PSG5Q15238 335 aa7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 BHLHA15Q7RTS1 189 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 MRPL52Q86TS9 123 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-218ENST00000513024 OR2K2Q8NGT1 345 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms