RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 RLN1P04808 185 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 CD5P06127 495 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 HIST1H1BP16401 226 aaKnown RBP6.72□□□□□ -1.33
SCN1A-207ENST00000507401 ANXA7P20073 488 aaKnown RBP6.72□□□□□ -1.33
SCN1A-207ENST00000507401 OTX1P32242 354 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-207ENST00000507401 PRSS3P35030 304 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 MDH2P40926 338 aaKnown RBP6.72□□□□□ -1.33
SCN1A-207ENST00000507401 CDX1P47902 265 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-207ENST00000507401 TAS2R20P59543 309 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 FABP9Q0Z7S8 132 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 CLEC12AQ5QGZ9 265 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 DCAF12L2Q5VW00 463 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 OTPQ5XKR4 325 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 OR2T2Q6IF00 324 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 OR10K2Q6IF99 312 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 TMEM88Q6PEY1 159 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 C1QL2Q7Z5L3 287 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 WFDC3Q8IUB2 231 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 CBLN2Q8IUK8 224 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 BEND2Q8NDZ0 799 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 ZNF418Q8TF45 676 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-207ENST00000507401 ITLN1Q8WWA0 313 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 SPTSSAQ969W0 71 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 NOL4LQ96MY1 436 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-207ENST00000507401 JMJD8Q96S16 334 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 TEAD3Q99594 435 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 PHB2Q99623 299 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 NMNAT2Q9BZQ4 307 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 NMES1Q9C002 83 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 TINAGL1Q9GZM7 467 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-207ENST00000507401 AUNIPQ9H7T9 357 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 PARP11Q9NR21 331 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 C19orf12Q9NSK7 152 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 GHRLQ9UBU3 117 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 SHPKQ9UHJ6 478 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 FLVCR2Q9UPI3 526 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 NOP16Q9Y3C1 178 aaKnown RBP6.72□□□□□ -1.33
SCN1A-207ENST00000507401 WNK2Q9Y3S1 2297 aa6.71□□□□□ -1.33
SCN1A-207ENST00000507401 CXorf65A6NEN9 183 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 LRRC30A6NM36 301 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 SEC14L6B5MCN3 397 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 E9PI62 339 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 J3QLW9 94 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 PSMD9O00233 223 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 LCATP04180 440 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 HOXB5P09067 269 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 WNT2P09544 360 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 OR4E1P0C645 316 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 ZNF44P15621 663 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 ZNF19P17023 458 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 RAB5AP20339 215 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 HOXA5P20719 270 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 ZFP36P26651 326 aaKnown RBP6.71□□□□□ -1.34
SCN1A-207ENST00000507401 HTR2CP28335 458 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 CD34P28906 385 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 GPX4P36969 197 aaPredicted RBP6.71□□□□□ -1.34
SCN1A-207ENST00000507401 OR10A3P58181 314 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 MADCAM1Q13477 382 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 FAM74A1Q5RGS3 127 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 SLC16A13Q7RTY0 426 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 LINC00346Q8IVM7 164 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 C1orf87Q8N0U7 546 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 LFNGQ8NES3 379 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 OR5AP2Q8NGF4 316 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 OR56B1Q8NGI3 324 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 OR1S2Q8NGQ3 325 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 OR4Q3Q8NH05 313 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 OR5R1Q8NH85 324 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 ZNRF4Q8WWF5 429 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 HIST1H2BAQ96A08 127 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 PTX4Q96A99 478 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 SLC25A38Q96DW6 304 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 C4orf36Q96KX1 117 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 SCGB3A2Q96PL1 93 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 CNN2Q99439 309 aaKnown RBP6.71□□□□□ -1.34
SCN1A-207ENST00000507401 SSX3Q99909 188 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 GGACTQ9BVM4 153 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 TLNRD1Q9H1K6 362 aa6.71□□□□□ -1.34
SCN1A-207ENST00000507401 ISG20L2Q9H9L3 353 aaKnown RBP6.71□□□□□ -1.34
SCN1A-207ENST00000507401 GAR1Q9NY12 217 aaKnown RBP6.71□□□□□ -1.34
SCN1A-207ENST00000507401 LOC105371242A0A075B767 164 aa6.7□□□□□ -1.34
SCN1A-207ENST00000507401 TRAV14DV4A0A0A6YYC5 116 aa6.7□□□□□ -1.34
SCN1A-207ENST00000507401 TRBV2A0A0J9YWF9 115 aa6.7□□□□□ -1.34
SCN1A-207ENST00000507401 A0A1B0GW64 132 aa6.7□□□□□ -1.34
SCN1A-207ENST00000507401 RNASEK-C17orf49H0YIS7 233 aa6.7□□□□□ -1.34
SCN1A-207ENST00000507401 H0YL77 283 aa6.7□□□□□ -1.34
SCN1A-207ENST00000507401 M0R135 149 aa6.7□□□□□ -1.34
SCN1A-207ENST00000507401 MLNRO43193 412 aa6.7□□□□□ -1.34
SCN1A-207ENST00000507401 FBXO24O75426 580 aa6.7□□□□□ -1.34
SCN1A-207ENST00000507401 PTBP3O95758 552 aaKnown RBP6.7□□□□□ -1.34
SCN1A-207ENST00000507401 FSHBP01225 129 aa6.7□□□□□ -1.34
SCN1A-207ENST00000507401 GAPDHP04406 335 aaKnown RBP6.7□□□□□ -1.34
SCN1A-207ENST00000507401 PPIAL4GP0DN37 164 aa6.7□□□□□ -1.34
SCN1A-207ENST00000507401 VSIG10L2P0DP72 767 aa6.7□□□□□ -1.34
SCN1A-207ENST00000507401 LYL1P12980 280 aa6.7□□□□□ -1.34
SCN1A-207ENST00000507401 ADCYAP1P18509 176 aa6.7□□□□□ -1.34
SCN1A-207ENST00000507401 ADRA2CP18825 462 aa6.7□□□□□ -1.34
SCN1A-207ENST00000507401 SLC2A5P22732 501 aa6.7□□□□□ -1.34
SCN1A-207ENST00000507401 VAMP1P23763 118 aa6.7□□□□□ -1.34
SCN1A-207ENST00000507401 CDK2P24941 298 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms