RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 RIMS4Q9H426 269 aaPredicted RBP13.49□□□□□ -0.25
SNCA-209ENST00000506244 LIN7BQ9HAP6 207 aa13.49□□□□□ -0.25
SNCA-209ENST00000506244 MBNL3Q9NUK0 354 aaKnown RBP13.49□□□□□ -0.25
SNCA-209ENST00000506244 C1RLQ9NZP8 487 aa13.49□□□□□ -0.25
SNCA-209ENST00000506244 RAB22AQ9UL26 194 aa13.49□□□□□ -0.25
SNCA-209ENST00000506244 LOC100506127A0A0U1RQW1 187 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 SHISA3A0PJX4 238 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 POM121CA8CG34 1229 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 NOTOA8MTQ0 251 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 C12orf77C9JDV5 145 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 C15orf65H3BRN8 121 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 BUB1B-PAK6H3BSN5 160 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 J3QR06 171 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 HAX1O00165 279 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 RAB6AP20340 208 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 BRS3P32247 399 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 MNDAP41218 407 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 MADCAM1Q13477 382 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 LY6EQ16553 131 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 C2orf76Q3KRA6 126 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 DYNAPQ8N1N2 210 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 C8orf31Q8N9H6 132 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 OR10X1Q8NGY0 326 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 MRPL30Q8TCC3 161 aaKnown RBP13.48□□□□□ -0.25
SNCA-209ENST00000506244 RPEQ96AT9 228 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 OR51E2Q9H255 320 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 CHMP1AQ9HD42 196 aaPredicted RBP13.48□□□□□ -0.25
SNCA-209ENST00000506244 GFOD1Q9NXC2 390 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 GNG12Q9UBI6 72 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 HSF4Q9ULV5 492 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 PSG11Q9UQ72 335 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 TCF19Q9Y242 345 aa13.48□□□□□ -0.25
SNCA-209ENST00000506244 A0A0A6YYD4 124 aa13.47□□□□□ -0.25
SNCA-209ENST00000506244 TMEM272A0A1B0GTI8 110 aa13.47□□□□□ -0.25
SNCA-209ENST00000506244 LDLRAD4O15165 306 aa13.47□□□□□ -0.25
SNCA-209ENST00000506244 HBZP02008 142 aa13.47□□□□□ -0.25
SNCA-209ENST00000506244 GADD45AP24522 165 aa13.47□□□□□ -0.25
SNCA-209ENST00000506244 PAX6P26367 422 aa13.47□□□□□ -0.25
SNCA-209ENST00000506244 IL3RAP26951 378 aa13.47□□□□□ -0.25
SNCA-209ENST00000506244 GNG10P50151 68 aa13.47□□□□□ -0.25
SNCA-209ENST00000506244 LDLRAD2Q5SZI1 272 aa13.47□□□□□ -0.25
SNCA-209ENST00000506244 TPTE2P1Q5T6R2 138 aa13.47□□□□□ -0.25
SNCA-209ENST00000506244 PRR18Q8N4B5 295 aa13.47□□□□□ -0.25
SNCA-209ENST00000506244 TOMM40LQ969M1 308 aa13.47□□□□□ -0.25
SNCA-209ENST00000506244 PTX4Q96A99 478 aa13.47□□□□□ -0.25
SNCA-209ENST00000506244 FAAP24Q9BTP7 215 aa13.47□□□□□ -0.25
SNCA-209ENST00000506244 NPFFR1Q9GZQ6 430 aa13.47□□□□□ -0.25
SNCA-209ENST00000506244 RANBP3Q9H6Z4 567 aaPredicted RBP13.47□□□□□ -0.25
SNCA-209ENST00000506244 TAF9BQ9HBM6 251 aa13.47□□□□□ -0.25
SNCA-209ENST00000506244 C12orf4Q9NQ89 552 aa13.47□□□□□ -0.25
SNCA-209ENST00000506244 ABRACLQ9P1F3 81 aa13.47□□□□□ -0.25
SNCA-209ENST00000506244 MGAT4AQ9UM21 535 aa13.47□□□□□ -0.25
SNCA-209ENST00000506244 METTL21EPA6NDL7 271 aa13.46□□□□□ -0.25
SNCA-209ENST00000506244 SOCS1O15524 211 aa13.46□□□□□ -0.25
SNCA-209ENST00000506244 RCC1P18754 421 aaPredicted RBP13.46□□□□□ -0.25
SNCA-209ENST00000506244 MDKP21741 143 aaPredicted RBP13.46□□□□□ -0.25
SNCA-209ENST00000506244 VEGFCP49767 419 aa13.46□□□□□ -0.25
SNCA-209ENST00000506244 MRPS15P82914 257 aaKnown RBP13.46□□□□□ -0.25
SNCA-209ENST00000506244 SFXN4Q6P4A7 337 aa13.46□□□□□ -0.25
SNCA-209ENST00000506244 LINC00311Q8N616 119 aa13.46□□□□□ -0.25
SNCA-209ENST00000506244 OR4C13Q8NGP0 309 aa13.46□□□□□ -0.25
SNCA-209ENST00000506244 LEAP2Q969E1 77 aa13.46□□□□□ -0.25
SNCA-209ENST00000506244 JPT1Q9UK76 154 aa13.46□□□□□ -0.25
SNCA-209ENST00000506244 CLPSL1A2RUU4 121 aa13.45□□□□□ -0.26
SNCA-209ENST00000506244 SCGNO76038 276 aa13.45□□□□□ -0.26
SNCA-209ENST00000506244 NAPSAO96009 420 aa13.45□□□□□ -0.26
SNCA-209ENST00000506244 LPLP06858 475 aa13.45□□□□□ -0.26
SNCA-209ENST00000506244 RAB7AP51149 207 aa13.45□□□□□ -0.26
SNCA-209ENST00000506244 LOXL3P58215 753 aa13.45□□□□□ -0.26
SNCA-209ENST00000506244 RELBQ01201 579 aa13.45□□□□□ -0.26
SNCA-209ENST00000506244 OLFML2AQ68BL7 652 aa13.45□□□□□ -0.26
SNCA-209ENST00000506244 Q6ZTK2 550 aa13.45□□□□□ -0.26
SNCA-209ENST00000506244 GALMQ96C23 342 aa13.45□□□□□ -0.26
SNCA-209ENST00000506244 AKR1E2Q96JD6 320 aa13.45□□□□□ -0.26
SNCA-209ENST00000506244 ZNF747Q9BV97 191 aa13.45□□□□□ -0.26
SNCA-209ENST00000506244 C16orf95Q9H693 158 aa13.45□□□□□ -0.26
SNCA-209ENST00000506244 TRBV6-6A0A0A6YYG2 114 aa13.44□□□□□ -0.26
SNCA-209ENST00000506244 TRIM64CA6NLI5 447 aa13.44□□□□□ -0.26
SNCA-209ENST00000506244 FOXI3A8MTJ6 420 aaPredicted RBP13.44□□□□□ -0.26
SNCA-209ENST00000506244 TMEM127O75204 238 aa13.44□□□□□ -0.26
SNCA-209ENST00000506244 TSPAN9O75954 239 aa13.44□□□□□ -0.26
SNCA-209ENST00000506244 RGS11O94810 467 aa13.44□□□□□ -0.26
SNCA-209ENST00000506244 IGHV3-7P01780 117 aa13.44□□□□□ -0.26
SNCA-209ENST00000506244 JUNBP17275 347 aaPredicted RBP13.44□□□□□ -0.26
SNCA-209ENST00000506244 SDC2P34741 201 aa13.44□□□□□ -0.26
SNCA-209ENST00000506244 SCAND1P57086 179 aa13.44□□□□□ -0.26
SNCA-209ENST00000506244 HTD2P86397 168 aa13.44□□□□□ -0.26
SNCA-209ENST00000506244 ARL6IP1Q15041 203 aa13.44□□□□□ -0.26
SNCA-209ENST00000506244 HMGN3Q15651 99 aa13.44□□□□□ -0.26
SNCA-209ENST00000506244 STEAP3Q658P3 488 aa13.44□□□□□ -0.26
SNCA-209ENST00000506244 SHISA2Q6UWI4 295 aa13.44□□□□□ -0.26
SNCA-209ENST00000506244 Q6ZSV7 163 aa13.44□□□□□ -0.26
SNCA-209ENST00000506244 C16orf82Q7Z2V1 217 aa13.44□□□□□ -0.26
SNCA-209ENST00000506244 NR2C2APQ86WQ0 139 aa13.44□□□□□ -0.26
SNCA-209ENST00000506244 OR8H3Q8N146 312 aa13.44□□□□□ -0.26
SNCA-209ENST00000506244 OR1L1Q8NH94 360 aa13.44□□□□□ -0.26
SNCA-209ENST00000506244 UBALD1Q8TB05 177 aa13.44□□□□□ -0.26
SNCA-209ENST00000506244 SETD6Q8TBK2 473 aa13.44□□□□□ -0.26
SNCA-209ENST00000506244 PIFOQ8TCI5 191 aa13.44□□□□□ -0.26
SNCA-209ENST00000506244 CAPSLQ8WWF8 208 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms