RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 VEGFCP49767 419 aa13.27□□□□□ -0.29
SF3A1-209ENST00000496189 LY6EQ16553 131 aa13.27□□□□□ -0.29
SF3A1-209ENST00000496189 C17orf58Q2M2W7 97 aa13.27□□□□□ -0.29
SF3A1-209ENST00000496189 PLA1AQ53H76 456 aa13.27□□□□□ -0.29
SF3A1-209ENST00000496189 GPR107Q5VW38 600 aa13.27□□□□□ -0.29
SF3A1-209ENST00000496189 CCDC144NLQ6NUI1 221 aa13.27□□□□□ -0.29
SF3A1-209ENST00000496189 ARL11Q969Q4 196 aa13.27□□□□□ -0.29
SF3A1-209ENST00000496189 KIRREL1Q96J84 757 aa13.27□□□□□ -0.29
SF3A1-209ENST00000496189 NICN1Q9BSH3 213 aa13.27□□□□□ -0.29
SF3A1-209ENST00000496189 KCNIP1Q9NZI2 227 aa13.27□□□□□ -0.29
SF3A1-209ENST00000496189 C1RLQ9NZP8 487 aa13.27□□□□□ -0.29
SF3A1-209ENST00000496189 DPM3Q9P2X0 92 aa13.27□□□□□ -0.29
SF3A1-209ENST00000496189 HSF4Q9ULV5 492 aa13.27□□□□□ -0.29
SF3A1-209ENST00000496189 ETV7Q9Y603 341 aa13.27□□□□□ -0.29
SF3A1-209ENST00000496189 VGLL3A8MV65 326 aa13.26□□□□□ -0.29
SF3A1-209ENST00000496189 ORC5O43913 435 aa13.26□□□□□ -0.29
SF3A1-209ENST00000496189 SCGNO76038 276 aa13.26□□□□□ -0.29
SF3A1-209ENST00000496189 CD34P28906 385 aa13.26□□□□□ -0.29
SF3A1-209ENST00000496189 LTC4SQ16873 150 aa13.26□□□□□ -0.29
SF3A1-209ENST00000496189 HLA-DRB5Q30154 266 aa13.26□□□□□ -0.29
SF3A1-209ENST00000496189 TMEM30BQ3MIR4 351 aa13.26□□□□□ -0.29
SF3A1-209ENST00000496189 SLC16A12Q6ZSM3 486 aa13.26□□□□□ -0.29
SF3A1-209ENST00000496189 Q6ZTK2 550 aa13.26□□□□□ -0.29
SF3A1-209ENST00000496189 C6orf201Q7Z4U5 140 aa13.26□□□□□ -0.29
SF3A1-209ENST00000496189 OR4P4Q8NGL7 312 aa13.26□□□□□ -0.29
SF3A1-209ENST00000496189 RFESDQ8TAC1 157 aa13.26□□□□□ -0.29
SF3A1-209ENST00000496189 CCDC107Q8WV48 283 aa13.26□□□□□ -0.29
SF3A1-209ENST00000496189 CAPSLQ8WWF8 208 aa13.26□□□□□ -0.29
SF3A1-209ENST00000496189 RIMS4Q9H426 269 aaPredicted RBP13.26□□□□□ -0.29
SF3A1-209ENST00000496189 MMP24Q9Y5R2 645 aa13.26□□□□□ -0.29
SF3A1-209ENST00000496189 A0A087X0M5 115 aa13.25□□□□□ -0.29
SF3A1-209ENST00000496189 A0A0A6YYD4 124 aa13.25□□□□□ -0.29
SF3A1-209ENST00000496189 A0A0B4J203 849 aa13.25□□□□□ -0.29
SF3A1-209ENST00000496189 A0A1B0GX30 115 aa13.25□□□□□ -0.29
SF3A1-209ENST00000496189 SOCS1O15524 211 aa13.25□□□□□ -0.29
SF3A1-209ENST00000496189 NOL3O60936 208 aaKnown RBP13.25□□□□□ -0.29
SF3A1-209ENST00000496189 GABARAPO95166 117 aa13.25□□□□□ -0.29
SF3A1-209ENST00000496189 MDKP21741 143 aaPredicted RBP13.25□□□□□ -0.29
SF3A1-209ENST00000496189 SSTR5P35346 364 aa13.25□□□□□ -0.29
SF3A1-209ENST00000496189 RPS19P39019 145 aaKnown RBP13.25□□□□□ -0.29
SF3A1-209ENST00000496189 MNDAP41218 407 aa13.25□□□□□ -0.29
SF3A1-209ENST00000496189 VBP1P61758 197 aa13.25□□□□□ -0.29
SF3A1-209ENST00000496189 NCS1P62166 190 aa13.25□□□□□ -0.29
SF3A1-209ENST00000496189 MRPS15P82914 257 aaKnown RBP13.25□□□□□ -0.29
SF3A1-209ENST00000496189 ARL6IP1Q15041 203 aa13.25□□□□□ -0.29
SF3A1-209ENST00000496189 SHISA2Q6UWI4 295 aa13.25□□□□□ -0.29
SF3A1-209ENST00000496189 OR4C13Q8NGP0 309 aa13.25□□□□□ -0.29
SF3A1-209ENST00000496189 PHF21AQ96BD5 680 aa13.25□□□□□ -0.29
SF3A1-209ENST00000496189 RAB3CQ96E17 227 aa13.25□□□□□ -0.29
SF3A1-209ENST00000496189 SULT4A1Q9BR01 284 aa13.25□□□□□ -0.29
SF3A1-209ENST00000496189 FAAP24Q9BTP7 215 aa13.25□□□□□ -0.29
SF3A1-209ENST00000496189 NPFFR1Q9GZQ6 430 aa13.25□□□□□ -0.29
SF3A1-209ENST00000496189 ATG5Q9H1Y0 275 aa13.25□□□□□ -0.29
SF3A1-209ENST00000496189 MMP28Q9H239 520 aa13.25□□□□□ -0.29
SF3A1-209ENST00000496189 LINC00574Q9H8X3 128 aa13.25□□□□□ -0.29
SF3A1-209ENST00000496189 ZNF286AQ9HBT8 521 aa13.25□□□□□ -0.29
SF3A1-209ENST00000496189 CHMP1AQ9HD42 196 aaPredicted RBP13.25□□□□□ -0.29
SF3A1-209ENST00000496189 ABRACLQ9P1F3 81 aa13.25□□□□□ -0.29
SF3A1-209ENST00000496189 DNHD1Q96M86 4753 aa13.24□□□□□ -0.29
SF3A1-209ENST00000496189 TRAV39A0A0B4J263 110 aa13.24□□□□□ -0.29
SF3A1-209ENST00000496189 CLPSL1A2RUU4 121 aa13.24□□□□□ -0.29
SF3A1-209ENST00000496189 OOSP1A8MZH6 123 aa13.24□□□□□ -0.29
SF3A1-209ENST00000496189 NPIPB11E5RHQ5 1161 aa13.24□□□□□ -0.29
SF3A1-209ENST00000496189 BUB1B-PAK6H3BSN5 160 aa13.24□□□□□ -0.29
SF3A1-209ENST00000496189 SDCBPO00560 298 aaPredicted RBP13.24□□□□□ -0.29
SF3A1-209ENST00000496189 CGB3P0DN86 165 aa13.24□□□□□ -0.29
SF3A1-209ENST00000496189 CGB7P0DN87 165 aa13.24□□□□□ -0.29
SF3A1-209ENST00000496189 SNRPBP14678 240 aaKnown RBP13.24□□□□□ -0.29
SF3A1-209ENST00000496189 DYNLT3P51808 116 aa13.24□□□□□ -0.29
SF3A1-209ENST00000496189 OLFML2AQ68BL7 652 aa13.24□□□□□ -0.29
SF3A1-209ENST00000496189 ZNF554Q86TJ5 538 aa13.24□□□□□ -0.29
SF3A1-209ENST00000496189 GAPTQ8N292 157 aa13.24□□□□□ -0.29
SF3A1-209ENST00000496189 OR52M1Q8NGK5 317 aa13.24□□□□□ -0.29
SF3A1-209ENST00000496189 OR10R2Q8NGX6 335 aa13.24□□□□□ -0.29
SF3A1-209ENST00000496189 OR10X1Q8NGY0 326 aa13.24□□□□□ -0.29
SF3A1-209ENST00000496189 OR4K15Q8NH41 348 aa13.24□□□□□ -0.29
SF3A1-209ENST00000496189 LGALS14Q8TCE9 139 aa13.24□□□□□ -0.29
SF3A1-209ENST00000496189 SLC25A46Q96AG3 418 aa13.24□□□□□ -0.29
SF3A1-209ENST00000496189 RPEQ96AT9 228 aa13.24□□□□□ -0.29
SF3A1-209ENST00000496189 AJUBAQ96IF1 538 aa13.24□□□□□ -0.29
SF3A1-209ENST00000496189 ZNF747Q9BV97 191 aa13.24□□□□□ -0.29
SF3A1-209ENST00000496189 KIAA2026Q5HYC2 2103 aa13.24□□□□□ -0.29
SF3A1-209ENST00000496189 J3QR06 171 aa13.23□□□□□ -0.29
SF3A1-209ENST00000496189 IGLV1-47P01700 117 aa13.23□□□□□ -0.29
SF3A1-209ENST00000496189 LPLP06858 475 aa13.23□□□□□ -0.29
SF3A1-209ENST00000496189 PAX6P26367 422 aa13.23□□□□□ -0.29
SF3A1-209ENST00000496189 IL3RAP26951 378 aa13.23□□□□□ -0.29
SF3A1-209ENST00000496189 TGFBR1P36897 503 aa13.23□□□□□ -0.29
SF3A1-209ENST00000496189 GDNFP39905 211 aa13.23□□□□□ -0.29
SF3A1-209ENST00000496189 GNG10P50151 68 aa13.23□□□□□ -0.29
SF3A1-209ENST00000496189 EFNB2P52799 333 aa13.23□□□□□ -0.29
SF3A1-209ENST00000496189 MADCAM1Q13477 382 aa13.23□□□□□ -0.29
SF3A1-209ENST00000496189 CTF1Q16619 201 aa13.23□□□□□ -0.29
SF3A1-209ENST00000496189 ARSJQ5FYB0 599 aaPredicted RBP13.23□□□□□ -0.29
SF3A1-209ENST00000496189 CLVS1Q8IUQ0 354 aaPredicted RBP13.23□□□□□ -0.29
SF3A1-209ENST00000496189 PRR18Q8N4B5 295 aa13.23□□□□□ -0.29
SF3A1-209ENST00000496189 RAB2BQ8WUD1 216 aa13.23□□□□□ -0.29
SF3A1-209ENST00000496189 TOMM40LQ969M1 308 aa13.23□□□□□ -0.29
SF3A1-209ENST00000496189 KCTD12Q96CX2 325 aaKnown RBP13.23□□□□□ -0.29
SF3A1-209ENST00000496189 ARHGAP5-AS1Q96IT6 56 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms