RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 CDX1P47902 265 aaPredicted RBP9.13□□□□□ -0.95
COL6A3-213ENST00000493475 REG1BP48304 166 aa9.13□□□□□ -0.95
COL6A3-213ENST00000493475 INSL3P51460 131 aa9.13□□□□□ -0.95
COL6A3-213ENST00000493475 KIR2DS1Q14954 304 aa9.13□□□□□ -0.95
COL6A3-213ENST00000493475 C11orf87Q6NUJ2 197 aa9.13□□□□□ -0.95
COL6A3-213ENST00000493475 ASCL4Q6XD76 172 aa9.13□□□□□ -0.95
COL6A3-213ENST00000493475 ETV3LQ6ZN32 361 aa9.13□□□□□ -0.95
COL6A3-213ENST00000493475 PLPPR1Q8TBJ4 325 aa9.13□□□□□ -0.95
COL6A3-213ENST00000493475 THRSPQ92748 146 aa9.13□□□□□ -0.95
COL6A3-213ENST00000493475 TFAP2CQ92754 450 aa9.13□□□□□ -0.95
COL6A3-213ENST00000493475 GFOD1Q9NXC2 390 aa9.13□□□□□ -0.95
COL6A3-213ENST00000493475 TAS2R4Q9NYW5 299 aa9.13□□□□□ -0.95
COL6A3-213ENST00000493475 KCNIP1Q9NZI2 227 aa9.13□□□□□ -0.95
COL6A3-213ENST00000493475 LINC00527Q9UJ94 153 aa9.13□□□□□ -0.95
COL6A3-213ENST00000493475 LOC100130705A0A1B0GUX0 176 aa9.12□□□□□ -0.95
COL6A3-213ENST00000493475 RGS11O94810 467 aa9.12□□□□□ -0.95
COL6A3-213ENST00000493475 CDRT1O95170 752 aa9.12□□□□□ -0.95
COL6A3-213ENST00000493475 OR8U8P0C7N1 319 aa9.12□□□□□ -0.95
COL6A3-213ENST00000493475 SLC22A6Q4U2R8 563 aa9.12□□□□□ -0.95
COL6A3-213ENST00000493475 STEAP3Q658P3 488 aa9.12□□□□□ -0.95
COL6A3-213ENST00000493475 ZNF529Q6P280 563 aa9.12□□□□□ -0.95
COL6A3-213ENST00000493475 LCNL1Q6ZST4 164 aa9.12□□□□□ -0.95
COL6A3-213ENST00000493475 RHOXF1Q8NHV9 184 aa9.12□□□□□ -0.95
COL6A3-213ENST00000493475 C4orf3Q8WVX3 66 aa9.12□□□□□ -0.95
COL6A3-213ENST00000493475 RTN4IP1Q8WWV3 396 aaPredicted RBP9.12□□□□□ -0.95
COL6A3-213ENST00000493475 S1PR3Q99500 378 aa9.12□□□□□ -0.95
COL6A3-213ENST00000493475 DCLRE1BQ9H816 532 aa9.12□□□□□ -0.95
COL6A3-213ENST00000493475 AMBNQ9NP70 447 aa9.12□□□□□ -0.95
COL6A3-213ENST00000493475 ETAA1Q9NY74 926 aa9.12□□□□□ -0.95
COL6A3-213ENST00000493475 U3KQK5 164 aa9.12□□□□□ -0.95
COL6A3-213ENST00000493475 KIAA2026Q5HYC2 2103 aa9.11□□□□□ -0.95
COL6A3-213ENST00000493475 IGHV3-72A0A0B4J1Y9 119 aa9.11□□□□□ -0.95
COL6A3-213ENST00000493475 A0A1W2PPE3 182 aa9.11□□□□□ -0.95
COL6A3-213ENST00000493475 SEC14L6B5MCN3 397 aa9.11□□□□□ -0.95
COL6A3-213ENST00000493475 GEMIN2O14893 280 aaKnown RBP9.11□□□□□ -0.95
COL6A3-213ENST00000493475 DIAPH2-AS1Q14236 149 aa9.11□□□□□ -0.95
COL6A3-213ENST00000493475 FAM27D1Q5T7N8 215 aa9.11□□□□□ -0.95
COL6A3-213ENST00000493475 ZNF497Q6ZNH5 498 aa9.11□□□□□ -0.95
COL6A3-213ENST00000493475 Q8N9W7 124 aa9.11□□□□□ -0.95
COL6A3-213ENST00000493475 OR52I1Q8NGK6 324 aa9.11□□□□□ -0.95
COL6A3-213ENST00000493475 CCDC107Q8WV48 283 aa9.11□□□□□ -0.95
COL6A3-213ENST00000493475 SMIM19Q96E16 107 aa9.11□□□□□ -0.95
COL6A3-213ENST00000493475 RAX2Q96IS3 184 aa9.11□□□□□ -0.95
COL6A3-213ENST00000493475 RDH12Q96NR8 316 aa9.11□□□□□ -0.95
COL6A3-213ENST00000493475 MRPS18AQ9NVS2 196 aaKnown RBP9.11□□□□□ -0.95
COL6A3-213ENST00000493475 KIAA1456Q9P272 454 aa9.11□□□□□ -0.95
COL6A3-213ENST00000493475 ZNF107Q9UII5 783 aaPredicted RBP9.11□□□□□ -0.95
COL6A3-213ENST00000493475 ZNF580Q9UK33 172 aa9.11□□□□□ -0.95
COL6A3-213ENST00000493475 FAM90A10PA6NDY2 464 aa9.1□□□□□ -0.95
COL6A3-213ENST00000493475 FAM90A7PA6NKC0 464 aa9.1□□□□□ -0.95
COL6A3-213ENST00000493475 FAM90A23PA8MXZ1 464 aa9.1□□□□□ -0.95
COL6A3-213ENST00000493475 E9PI62 339 aa9.1□□□□□ -0.95
COL6A3-213ENST00000493475 IGHG4P01861 327 aa9.1□□□□□ -0.95
COL6A3-213ENST00000493475 RPLP1P05386 114 aaKnown RBP9.1□□□□□ -0.95
COL6A3-213ENST00000493475 GLAP06280 429 aa9.1□□□□□ -0.95
COL6A3-213ENST00000493475 CD40LGP29965 261 aa9.1□□□□□ -0.95
COL6A3-213ENST00000493475 ECI1P42126 302 aa9.1□□□□□ -0.95
COL6A3-213ENST00000493475 TAS2R43P59537 309 aa9.1□□□□□ -0.95
COL6A3-213ENST00000493475 MMDQ15546 238 aa9.1□□□□□ -0.95
COL6A3-213ENST00000493475 YIF1BQ5BJH7 314 aa9.1□□□□□ -0.95
COL6A3-213ENST00000493475 XP32Q5T750 250 aa9.1□□□□□ -0.95
COL6A3-213ENST00000493475 SLC25A48Q6ZT89 311 aaKnown RBP9.1□□□□□ -0.95
COL6A3-213ENST00000493475 ZNF554Q86TJ5 538 aa9.1□□□□□ -0.95
COL6A3-213ENST00000493475 CDH26Q8IXH8 852 aa9.1□□□□□ -0.95
COL6A3-213ENST00000493475 PRR18Q8N4B5 295 aa9.1□□□□□ -0.95
COL6A3-213ENST00000493475 JAGN1Q8N5M9 183 aa9.1□□□□□ -0.95
COL6A3-213ENST00000493475 RNF152Q8N8N0 203 aa9.1□□□□□ -0.95
COL6A3-213ENST00000493475 ZNF184Q99676 751 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-213ENST00000493475 ZNF251Q9BRH9 671 aa9.1□□□□□ -0.95
COL6A3-213ENST00000493475 GHITMQ9H3K2 345 aa9.1□□□□□ -0.95
COL6A3-213ENST00000493475 FGF20Q9NP95 211 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-213ENST00000493475 BABAM2Q9NXR7 383 aa9.1□□□□□ -0.95
COL6A3-213ENST00000493475 MRPS28Q9Y2Q9 187 aaKnown RBP9.1□□□□□ -0.95
COL6A3-213ENST00000493475 EXOSC1Q9Y3B2 195 aaKnown RBP9.1□□□□□ -0.95
COL6A3-213ENST00000493475 LRRC42Q9Y546 428 aa9.1□□□□□ -0.95
COL6A3-213ENST00000493475 TRAV39A0A0B4J263 110 aa9.09□□□□□ -0.95
COL6A3-213ENST00000493475 C15orf65H3BRN8 121 aa9.09□□□□□ -0.95
COL6A3-213ENST00000493475 LY86O95711 162 aa9.09□□□□□ -0.95
COL6A3-213ENST00000493475 MT-ND4P03905 459 aa9.09□□□□□ -0.95
COL6A3-213ENST00000493475 IGF1P05019 195 aa9.09□□□□□ -0.95
COL6A3-213ENST00000493475 GABRB1P18505 474 aa9.09□□□□□ -0.95
COL6A3-213ENST00000493475 MAPK3P27361 379 aaPredicted RBP9.09□□□□□ -0.95
COL6A3-213ENST00000493475 GTF2A1P52655 376 aaPredicted RBP9.09□□□□□ -0.95
COL6A3-213ENST00000493475 ZNF137PP52743 207 aa9.09□□□□□ -0.95
COL6A3-213ENST00000493475 ZNF260Q3ZCT1 412 aa9.09□□□□□ -0.95
COL6A3-213ENST00000493475 Q499Y3 187 aa9.09□□□□□ -0.95
COL6A3-213ENST00000493475 SYT6Q5T7P8 510 aaPredicted RBP9.09□□□□□ -0.95
COL6A3-213ENST00000493475 AWAT2Q6E213 333 aa9.09□□□□□ -0.95
COL6A3-213ENST00000493475 RAB12Q6IQ22 244 aa9.09□□□□□ -0.95
COL6A3-213ENST00000493475 Q8N6K4 173 aa9.09□□□□□ -0.95
COL6A3-213ENST00000493475 NKAIN3Q8N8D7 197 aa9.09□□□□□ -0.95
COL6A3-213ENST00000493475 SETD9Q8NE22 299 aa9.09□□□□□ -0.95
COL6A3-213ENST00000493475 UBE2E2Q96LR5 201 aa9.09□□□□□ -0.95
COL6A3-213ENST00000493475 DUX3Q96PT4 197 aa9.09□□□□□ -0.95
COL6A3-213ENST00000493475 CST11Q9H112 138 aa9.09□□□□□ -0.95
COL6A3-213ENST00000493475 OR2S2Q9NQN1 319 aa9.09□□□□□ -0.95
COL6A3-213ENST00000493475 ABRACLQ9P1F3 81 aa9.09□□□□□ -0.95
COL6A3-213ENST00000493475 VSIG4Q9Y279 399 aa9.09□□□□□ -0.95
COL6A3-213ENST00000493475 ZNF256Q9Y2P7 627 aaPredicted RBP9.09□□□□□ -0.95
COL6A3-213ENST00000493475 IGHV3-43A0A0B4J1X8 118 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms