RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 GFOD1Q9NXC2 390 aa16.92■□□□□ 0.3
LIME1-207ENST00000489212 TRAPPC2LQ9UL33 140 aa16.92■□□□□ 0.3
LIME1-207ENST00000489212 BLOC1S6Q9UL45 172 aa16.92■□□□□ 0.3
LIME1-207ENST00000489212 A0A1W2PPI3 338 aa16.91■□□□□ 0.3
LIME1-207ENST00000489212 FAM90A9PA6NNJ1 464 aa16.91■□□□□ 0.3
LIME1-207ENST00000489212 SDCBPO00560 298 aaPredicted RBP16.91■□□□□ 0.3
LIME1-207ENST00000489212 TSPAN15O95858 294 aa16.91■□□□□ 0.3
LIME1-207ENST00000489212 RCC1P18754 421 aaPredicted RBP16.91■□□□□ 0.3
LIME1-207ENST00000489212 PSMA1P25786 263 aaKnown RBP16.91■□□□□ 0.3
LIME1-207ENST00000489212 MNDAP41218 407 aa16.91■□□□□ 0.3
LIME1-207ENST00000489212 RPS27AP62979 156 aaKnown RBP16.91■□□□□ 0.3
LIME1-207ENST00000489212 MADCAM1Q13477 382 aa16.91■□□□□ 0.3
LIME1-207ENST00000489212 SSX1Q16384 188 aa16.91■□□□□ 0.3
LIME1-207ENST00000489212 Q6ZTK2 550 aa16.91■□□□□ 0.3
LIME1-207ENST00000489212 ZNF367Q7RTV3 350 aa16.91■□□□□ 0.3
LIME1-207ENST00000489212 C16orf82Q7Z2V1 217 aa16.91■□□□□ 0.3
LIME1-207ENST00000489212 DTX3Q8N9I9 347 aa16.91■□□□□ 0.3
LIME1-207ENST00000489212 OR1L1Q8NH94 360 aa16.91■□□□□ 0.3
LIME1-207ENST00000489212 WIPF2Q8TF74 440 aaPredicted RBP16.91■□□□□ 0.3
LIME1-207ENST00000489212 RBM14Q96PK6 669 aaKnown RBP16.91■□□□□ 0.3
LIME1-207ENST00000489212 SLC25A33Q9BSK2 321 aa16.91■□□□□ 0.3
LIME1-207ENST00000489212 LIN7BQ9HAP6 207 aa16.91■□□□□ 0.3
LIME1-207ENST00000489212 AK6Q9Y3D8 172 aaKnown RBP16.91■□□□□ 0.3
LIME1-207ENST00000489212 TMEM14DPA8MWL7 114 aa16.9■□□□□ 0.3
LIME1-207ENST00000489212 CA11O75493 328 aa16.9■□□□□ 0.3
LIME1-207ENST00000489212 OR2F2O95006 317 aa16.9■□□□□ 0.3
LIME1-207ENST00000489212 CHATP28329 748 aa16.9■□□□□ 0.3
LIME1-207ENST00000489212 P2RY14Q15391 338 aa16.9■□□□□ 0.3
LIME1-207ENST00000489212 NKAPLQ5M9Q1 402 aa16.9■□□□□ 0.3
LIME1-207ENST00000489212 C5orf24Q7Z6I8 188 aa16.9■□□□□ 0.3
LIME1-207ENST00000489212 LINC00311Q8N616 119 aa16.9■□□□□ 0.3
LIME1-207ENST00000489212 DRAM1Q8N682 238 aa16.9■□□□□ 0.3
LIME1-207ENST00000489212 OR6M1Q8NGM8 313 aa16.9■□□□□ 0.3
LIME1-207ENST00000489212 OR10X1Q8NGY0 326 aa16.9■□□□□ 0.3
LIME1-207ENST00000489212 OR56B4Q8NH76 319 aa16.9■□□□□ 0.3
LIME1-207ENST00000489212 MRPL30Q8TCC3 161 aaKnown RBP16.9■□□□□ 0.3
LIME1-207ENST00000489212 CAPSLQ8WWF8 208 aa16.9■□□□□ 0.3
LIME1-207ENST00000489212 SULT4A1Q9BR01 284 aa16.9■□□□□ 0.3
LIME1-207ENST00000489212 OCSTAMPQ9BR26 566 aa16.9■□□□□ 0.3
LIME1-207ENST00000489212 NICN1Q9BSH3 213 aa16.9■□□□□ 0.3
LIME1-207ENST00000489212 TMEM59Q9BXS4 323 aa16.9■□□□□ 0.3
LIME1-207ENST00000489212 A0A0A6YYD4 124 aa16.89■□□□□ 0.29
LIME1-207ENST00000489212 SLC31A2O15432 143 aa16.89■□□□□ 0.29
LIME1-207ENST00000489212 BPNT1O95861 308 aa16.89■□□□□ 0.29
LIME1-207ENST00000489212 HBZP02008 142 aa16.89■□□□□ 0.29
LIME1-207ENST00000489212 AMY1AP04745 511 aa16.89■□□□□ 0.29
LIME1-207ENST00000489212 AMY2AP04746 511 aa16.89■□□□□ 0.29
LIME1-207ENST00000489212 CALRP27797 417 aaKnown RBP16.89■□□□□ 0.29
LIME1-207ENST00000489212 EMX1Q04741 257 aaPredicted RBP16.89■□□□□ 0.29
LIME1-207ENST00000489212 C6orf183Q5T699 404 aa16.89■□□□□ 0.29
LIME1-207ENST00000489212 KCNG3Q8TAE7 436 aa16.89■□□□□ 0.29
LIME1-207ENST00000489212 TM2D1Q9BX74 207 aa16.89■□□□□ 0.29
LIME1-207ENST00000489212 WNT10AQ9GZT5 417 aa16.89■□□□□ 0.29
LIME1-207ENST00000489212 MMP27Q9H306 513 aa16.89■□□□□ 0.29
LIME1-207ENST00000489212 MBNL3Q9NUK0 354 aaKnown RBP16.89■□□□□ 0.29
LIME1-207ENST00000489212 SH2D7A6NKC9 451 aaPredicted RBP16.88■□□□□ 0.29
LIME1-207ENST00000489212 H3BUI4 141 aa16.88■□□□□ 0.29
LIME1-207ENST00000489212 SLC17A2O00624 439 aa16.88■□□□□ 0.29
LIME1-207ENST00000489212 SPINT2O43291 252 aa16.88■□□□□ 0.29
LIME1-207ENST00000489212 DENRO43583 198 aaKnown RBP16.88■□□□□ 0.29
LIME1-207ENST00000489212 ARL6IP5O75915 188 aa16.88■□□□□ 0.29
LIME1-207ENST00000489212 SNRNP70P08621 437 aaKnown RBP16.88■□□□□ 0.29
LIME1-207ENST00000489212 GABARAPL2P60520 117 aa16.88■□□□□ 0.29
LIME1-207ENST00000489212 C6orf201Q7Z4U5 140 aa16.88■□□□□ 0.29
LIME1-207ENST00000489212 THNSL2Q86YJ6 484 aa16.88■□□□□ 0.29
LIME1-207ENST00000489212 PRR18Q8N4B5 295 aa16.88■□□□□ 0.29
LIME1-207ENST00000489212 C8orf31Q8N9H6 132 aa16.88■□□□□ 0.29
LIME1-207ENST00000489212 ZNF439Q8NDP4 499 aa16.88■□□□□ 0.29
LIME1-207ENST00000489212 NEDD4LQ96PU5 975 aa16.88■□□□□ 0.29
LIME1-207ENST00000489212 FAAP24Q9BTP7 215 aa16.88■□□□□ 0.29
LIME1-207ENST00000489212 TAF9BQ9HBM6 251 aa16.88■□□□□ 0.29
LIME1-207ENST00000489212 HSD17B6O14756 317 aa16.87■□□□□ 0.29
LIME1-207ENST00000489212 FAM106CPP0CH98 169 aa16.87■□□□□ 0.29
LIME1-207ENST00000489212 CD28P10747 220 aa16.87■□□□□ 0.29
LIME1-207ENST00000489212 VDAC2P45880 294 aaPredicted RBP16.87■□□□□ 0.29
LIME1-207ENST00000489212 REG1BP48304 166 aa16.87■□□□□ 0.29
LIME1-207ENST00000489212 RAB7AP51149 207 aa16.87■□□□□ 0.29
LIME1-207ENST00000489212 ZNF134P52741 427 aa16.87■□□□□ 0.29
LIME1-207ENST00000489212 ZNF816Q0VGE8 651 aaPredicted RBP16.87■□□□□ 0.29
LIME1-207ENST00000489212 C2orf68Q2NKX9 166 aa16.87■□□□□ 0.29
LIME1-207ENST00000489212 ABCA11PQ4W5N1 156 aa16.87■□□□□ 0.29
LIME1-207ENST00000489212 OR8H3Q8N146 312 aa16.87■□□□□ 0.29
LIME1-207ENST00000489212 OR10V1Q8NGI7 309 aa16.87■□□□□ 0.29
LIME1-207ENST00000489212 AKR1E2Q96JD6 320 aa16.87■□□□□ 0.29
LIME1-207ENST00000489212 LPAR5Q9H1C0 372 aa16.87■□□□□ 0.29
LIME1-207ENST00000489212 PLGRKTQ9HBL7 147 aa16.87■□□□□ 0.29
LIME1-207ENST00000489212 ARSBP15848 533 aa16.86■□□□□ 0.29
LIME1-207ENST00000489212 CLDN12P56749 244 aa16.86■□□□□ 0.29
LIME1-207ENST00000489212 RAB11BQ15907 218 aa16.86■□□□□ 0.29
LIME1-207ENST00000489212 Q3ZCU0 254 aa16.86■□□□□ 0.29
LIME1-207ENST00000489212 ARSJQ5FYB0 599 aaPredicted RBP16.86■□□□□ 0.29
LIME1-207ENST00000489212 TRAT1Q6PIZ9 186 aa16.86■□□□□ 0.29
LIME1-207ENST00000489212 Q6ZPA2 131 aa16.86■□□□□ 0.29
LIME1-207ENST00000489212 FAM110DQ8TAY7 271 aaPredicted RBP16.86■□□□□ 0.29
LIME1-207ENST00000489212 ST6GALNAC6Q969X2 333 aa16.86■□□□□ 0.29
LIME1-207ENST00000489212 NDUFB11Q9NX14 153 aa16.86■□□□□ 0.29
LIME1-207ENST00000489212 GNG12Q9UBI6 72 aa16.86■□□□□ 0.29
LIME1-207ENST00000489212 IGHV1-3A0A0C4DH29 117 aa16.85■□□□□ 0.29
LIME1-207ENST00000489212 SHISA3A0PJX4 238 aa16.85■□□□□ 0.29
LIME1-207ENST00000489212 CCRL2O00421 344 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms