RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 RHOAP61586 193 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 TNNC1P63316 161 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 OLIG3Q7RTU3 272 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 OR9I1Q8NGQ6 314 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 ANGPTL6Q8NI99 470 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 LRRC20Q8TCA0 184 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 CD200R1Q8TD46 325 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 HIST1H2BAQ96A08 127 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 MRAP2Q96G30 205 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 FAM210AQ96ND0 272 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 CATSPER2Q96P56 530 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 APOL4Q9BPW4 351 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 SIKE1Q9BRV8 207 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 TAPBPLQ9BX59 468 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 POTEKPQ9BYX7 375 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 XKR8Q9H6D3 395 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 METTL8Q9H825 291 aaKnown RBP0.64□□□□□ -2.31
VPS50-216ENST00000484954 KCNIP2Q9NS61 270 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 COL4A1P02462 1669 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 MALRD1Q5VYJ5 2156 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 COL6A6A6NMZ7 2263 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 OTOFQ9HC10 1997 aa0.63□□□□□ -2.31
VPS50-216ENST00000484954 A0A1W2PRG6 482 aa0.63□□□□□ -2.31
VPS50-216ENST00000484954 KNCNA6PVL3 124 aa0.63□□□□□ -2.31
VPS50-216ENST00000484954 EEF1E1O43324 174 aaKnown RBP0.63□□□□□ -2.31
VPS50-216ENST00000484954 SGCEO43556 437 aa0.63□□□□□ -2.31
VPS50-216ENST00000484954 FADS2O95864 444 aaKnown RBP0.63□□□□□ -2.31
VPS50-216ENST00000484954 S100A9P06702 114 aaKnown RBP0.63□□□□□ -2.31
VPS50-216ENST00000484954 GABRA4P48169 554 aa0.63□□□□□ -2.31
VPS50-216ENST00000484954 ETV1P50549 477 aa0.63□□□□□ -2.31
VPS50-216ENST00000484954 RAB25P57735 213 aa0.63□□□□□ -2.31
VPS50-216ENST00000484954 APOFQ13790 326 aa0.63□□□□□ -2.31
VPS50-216ENST00000484954 SS18Q15532 418 aa0.63□□□□□ -2.31
VPS50-216ENST00000484954 TMEM176BQ3YBM2 270 aaPredicted RBP0.63□□□□□ -2.31
VPS50-216ENST00000484954 SPIN4Q56A73 249 aa0.63□□□□□ -2.31
VPS50-216ENST00000484954 HENMT1Q5T8I9 393 aaKnown RBP0.63□□□□□ -2.31
VPS50-216ENST00000484954 XKRXQ6PP77 449 aa0.63□□□□□ -2.31
VPS50-216ENST00000484954 MRPL52Q86TS9 123 aaKnown RBP0.63□□□□□ -2.31
VPS50-216ENST00000484954 MUC15Q8N387 334 aa0.63□□□□□ -2.31
VPS50-216ENST00000484954 OR5C1Q8NGR4 320 aa0.63□□□□□ -2.31
VPS50-216ENST00000484954 ZNRF2Q8NHG8 242 aa0.63□□□□□ -2.31
VPS50-216ENST00000484954 CASTOR1Q8WTX7 329 aa0.63□□□□□ -2.31
VPS50-216ENST00000484954 C19orf60Q96EN9 201 aa0.63□□□□□ -2.31
VPS50-216ENST00000484954 ZNF625Q96I27 306 aaPredicted RBP0.63□□□□□ -2.31
VPS50-216ENST00000484954 NAP1L5Q96NT1 182 aaPredicted RBP0.63□□□□□ -2.31
VPS50-216ENST00000484954 HBEGFQ99075 208 aa0.63□□□□□ -2.31
VPS50-216ENST00000484954 PSORS1C2Q9UIG4 136 aa0.63□□□□□ -2.31
VPS50-216ENST00000484954 SCML1Q9UN30 329 aa0.63□□□□□ -2.31
VPS50-216ENST00000484954 AMMECR1Q9Y4X0 333 aaPredicted RBP0.63□□□□□ -2.31
VPS50-216ENST00000484954 HEY1Q9Y5J3 304 aa0.63□□□□□ -2.31
VPS50-216ENST00000484954 SHANK3Q9BYB0 1731 aa0.63□□□□□ -2.31
VPS50-216ENST00000484954 PLCH2O75038 1416 aa0.63□□□□□ -2.31
VPS50-216ENST00000484954 ABCB11O95342 1321 aa0.63□□□□□ -2.31
VPS50-216ENST00000484954 LOC100506127A0A0U1RQW1 187 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 ERICH4A6NGS2 130 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 ARGFXA6NJG6 315 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 GPR171O14626 319 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 DENRO43583 198 aaKnown RBP0.62□□□□□ -2.31
VPS50-216ENST00000484954 LDOC1O95751 146 aaPredicted RBP0.62□□□□□ -2.31
VPS50-216ENST00000484954 RAB36O95755 333 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 GYPCP04921 128 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 LIMS3P0CW19 117 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 LIMS4P0CW20 117 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 IGHV3-30-3P0DP02 117 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 CTSEP14091 401 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 ZNF7P17097 686 aaPredicted RBP0.62□□□□□ -2.31
VPS50-216ENST00000484954 SYT1P21579 422 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 HADHBP55084 474 aaKnown RBP0.62□□□□□ -2.31
VPS50-216ENST00000484954 OR2B6P58173 313 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 FAM3AP98173 230 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 DEFA6Q01524 100 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 BSPH1Q075Z2 132 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 RAB31Q13636 194 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 HTR4Q13639 388 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 Q3ZCU0 254 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 CENPWQ5EE01 88 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 VN1R4Q7Z5H5 301 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 MTERF4Q7Z6M4 381 aaKnown RBP0.62□□□□□ -2.31
VPS50-216ENST00000484954 DOLPP1Q86YN1 238 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 C2orf73Q8N5S3 287 aaPredicted RBP0.62□□□□□ -2.31
VPS50-216ENST00000484954 DDIT4LQ96D03 193 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 SERPINB11Q96P15 392 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 TBX5Q99593 518 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 C11orf49Q9H6J7 331 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 MINOS1-NBL1R4GNA1 71 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 COL18A1P39060 1754 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 LCTP09848 1927 aa0.62□□□□□ -2.31
VPS50-216ENST00000484954 NOTCH1P46531 2555 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 ARAP3Q8WWN8 1544 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 MUC21A0A0G2JKD1 596 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 GOLGA8QA0A0J9YX86 632 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 MUC21A0A140T8X8 626 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 F5H5T6 163 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 KLRC4-KLRK1H3BQV0 150 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 H3BSA7 217 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 TP53I11O14683 189 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 MPZL2O60487 215 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 APOA1P02647 267 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 CRYGDP07320 174 aa0.61□□□□□ -2.31
VPS50-216ENST00000484954 CCDC172P0C7W6 258 aa0.61□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms