RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 RAX2Q96IS3 184 aa9.62□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 PGLYRP3Q96LB9 341 aa9.62□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 B9D2Q9BPU9 175 aa9.62□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 MCRIP2Q9BUT9 160 aaKnown RBP9.62□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 FAM192AQ9GZU8 254 aa9.62□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 LIN7CQ9NUP9 197 aaKnown RBP9.62□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 PAK1IP1Q9NWT1 392 aaPredicted RBP9.62□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 CLEC2DQ9UHP7 191 aa9.62□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 ZNF580Q9UK33 172 aa9.62□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 DIMT1Q9UNQ2 313 aaKnown RBP9.62□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 TRAV8-7A0A075B6U6 113 aa9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 IGHV3-72A0A0B4J1Y9 119 aa9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 ZNF736B4DX44 427 aaPredicted RBP9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 AP4M1O00189 453 aa9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 SC5DO75845 299 aa9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 CSTBP04080 98 aaKnown RBP9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 GTF2F2P13984 249 aa9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 FSTP19883 344 aa9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 SERPINA2P20848 420 aa9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 CAPGP40121 348 aa9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 CDX1P47902 265 aaPredicted RBP9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 REG1BP48304 166 aa9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 ADARB1P78563 741 aaKnown RBP9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 MED21Q13503 144 aa9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 Q499Y3 187 aa9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 CT45A1Q5HYN5 189 aa9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 DEFB121Q5J5C9 76 aa9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 STEAP3Q658P3 488 aa9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 TEX38Q6PEX7 206 aa9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 TMPRSS11AQ6ZMR5 421 aa9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 MOB3BQ86TA1 216 aa9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 ZNF695Q8IW36 515 aa9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 FOXRED2Q8IWF2 684 aa9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 CDH26Q8IXH8 852 aa9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 C8orf59Q8N0T1 100 aaPredicted RBP9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 OR2T10Q8NGZ9 312 aa9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 CT45A3Q8NHU0 189 aa9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 MRPS24Q96EL2 167 aaKnown RBP9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 ZNF184Q99676 751 aaPredicted RBP9.61□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 STAB2Q8WWQ8 2551 aa9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 C12orf77C9JDV5 145 aa9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 SDCBPO00560 298 aaPredicted RBP9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 SLC31A2O15432 143 aa9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 MOSP00540 346 aa9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 RPLP1P05386 114 aaKnown RBP9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 F2RL1P55085 397 aa9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 PPP3R1P63098 170 aa9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 SLC35B1P78383 322 aa9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 FOXE3Q13461 319 aa9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 RIPK1Q13546 671 aa9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 GPR176Q14439 515 aa9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 KIR2DS1Q14954 304 aa9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 PNLIPRP3Q17RR3 467 aa9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 SLC22A6Q4U2R8 563 aa9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 YIF1BQ5BJH7 314 aa9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 SIGIRRQ6IA17 410 aa9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 KLHL30-AS1Q8NEE0 82 aa9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 OR8H1Q8NGG4 311 aa9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 UBALD1Q8TB05 177 aa9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 MYOZ3Q8TDC0 251 aa9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 CCDC107Q8WV48 283 aa9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 CYYR1Q96J86 154 aa9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 S1PR3Q99500 378 aa9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 EXOSC1Q9Y3B2 195 aaKnown RBP9.6□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 IGHV3-43A0A0B4J1X8 118 aa9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 FAM90A10PA6NDY2 464 aa9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 FAM90A7PA6NKC0 464 aa9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 NCBP2LA6PVI3 153 aaKnown RBP9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 FAM90A23PA8MXZ1 464 aa9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 CCL24O00175 119 aa9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 IGHG4P01861 327 aa9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 IGF1P05019 195 aa9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 CD1AP06126 327 aa9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 GLAP06280 429 aa9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 ELANEP08246 267 aa9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 IGHV3-43DP0DP04 118 aa9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 KIAA0141Q14154 515 aaPredicted RBP9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 DOC2BQ14184 412 aa9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 TMEM30BQ3MIR4 351 aa9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 ATAD3CQ5T2N8 411 aa9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 SYT6Q5T7P8 510 aaPredicted RBP9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 LAIR2Q6ISS4 152 aa9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 GGHQ92820 318 aa9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 RBMXL1Q96E39 390 aaKnown RBP9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 HSPB9Q9BQS6 159 aa9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 SPACA1Q9HBV2 294 aa9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 MBNL3Q9NUK0 354 aaKnown RBP9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 CHCHD3Q9NX63 227 aaKnown RBP9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 NKX1-2Q9UD57 310 aaPredicted RBP9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 LSM4Q9Y4Z0 139 aaKnown RBP9.59□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 AIPO00170 330 aa9.58□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 TXNL1O43396 289 aa9.58□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 LANCL1O43813 399 aa9.58□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 CA11O75493 328 aa9.58□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 HBZP02008 142 aa9.58□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 RCC1P18754 421 aaPredicted RBP9.58□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 MYL12AP19105 171 aa9.58□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 PSMB8P28062 276 aa9.58□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 PPIFP30405 207 aaKnown RBP9.58□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 GP2P55259 537 aaKnown RBP9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms