RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 C6orf201Q7Z4U5 140 aa9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 CROCCP3Q8IVE0 287 aa9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 PDZD9Q8IXQ8 264 aa9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 OR13A1Q8NGR1 328 aa9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 NAA50Q9GZZ1 169 aaKnown RBP9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 ETAA1Q9NY74 926 aa9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 SCOCQ9UIL1 159 aa9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 UBE2QL1A1L167 161 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 NPFFO15130 113 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 SOCS1O15524 211 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 IGHV4-59P01825 116 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 MT-ND4P03905 459 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 CGB3P0DN86 165 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 CGB7P0DN87 165 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 IGHV1-8P0DP01 117 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 SNRPBP14678 240 aaKnown RBP9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 RPS19P39019 145 aaKnown RBP9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 SERPINB10P48595 397 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 VEGFCP49767 419 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 EFNB2P52799 333 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 CTF1Q16619 201 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 C17orf58Q2M2W7 97 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 HCP5Q6MZN7 132 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 HEPN1Q6WQI6 88 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 ZNF782Q6ZMW2 699 aaPredicted RBP9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 Q6ZSV7 163 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 GAPTQ8N292 157 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 ZNF565Q8N9K5 539 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 OR56B1Q8NGI3 324 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 LGALS14Q8TCE9 139 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 CYYR1Q96J86 154 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 SULT4A1Q9BR01 284 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 HEXA-AS1Q9H8Q6 139 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 HSF4Q9ULV5 492 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 ETV7Q9Y603 341 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 RYR2Q92736 4967 aa9.64□□□□□ -0.87
SQSTM1-206ENST00000466342 KBTBD11-OT1A0A1B0GTJ5 212 aa9.63□□□□□ -0.87
SQSTM1-206ENST00000466342 METTL21EPA6NDL7 271 aa9.63□□□□□ -0.87
SQSTM1-206ENST00000466342 MMP23AO75900 390 aa9.63□□□□□ -0.87
SQSTM1-206ENST00000466342 PAHP00439 452 aa9.63□□□□□ -0.87
SQSTM1-206ENST00000466342 TMEM50BP56557 158 aa9.63□□□□□ -0.87
SQSTM1-206ENST00000466342 PRAMEF5Q5TYX0 476 aa9.63□□□□□ -0.87
SQSTM1-206ENST00000466342 RTN4RL2Q86UN3 420 aa9.63□□□□□ -0.87
SQSTM1-206ENST00000466342 MRGPRDQ8TDS7 321 aa9.63□□□□□ -0.87
SQSTM1-206ENST00000466342 SLC25A46Q96AG3 418 aa9.63□□□□□ -0.87
SQSTM1-206ENST00000466342 FAAP24Q9BTP7 215 aa9.63□□□□□ -0.87
SQSTM1-206ENST00000466342 LINC00574Q9H8X3 128 aa9.63□□□□□ -0.87
SQSTM1-206ENST00000466342 PLEKHJ1Q9NW61 149 aa9.63□□□□□ -0.87
SQSTM1-206ENST00000466342 CALYQ9NYX4 217 aa9.63□□□□□ -0.87
SQSTM1-206ENST00000466342 ABRACLQ9P1F3 81 aa9.63□□□□□ -0.87
SQSTM1-206ENST00000466342 ZNRD1Q9P1U0 126 aa9.63□□□□□ -0.87
SQSTM1-206ENST00000466342 SESN1Q9Y6P5 492 aa9.63□□□□□ -0.87
SQSTM1-206ENST00000466342 TRAV39A0A0B4J263 110 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 MEIOCA2RUB1 952 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 BTBD17A6NE02 478 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 NPIPB11E5RHQ5 1161 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 RAB27BO00194 218 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 ORC5O43913 435 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 GZMHP20718 246 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 COX7A1P24310 79 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 CDK2P24941 298 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 SSTR5P35346 364 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 SAA4P35542 130 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 GDNFP39905 211 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 MOGAT2Q3SYC2 334 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 PLAC9Q5JTB6 97 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 C6orf183Q5T699 404 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 OR52W1Q6IF63 320 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 Q6ZTK2 550 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 CLVS1Q8IUQ0 354 aaPredicted RBP9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 PNKDQ8N490 385 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 OR13D1Q8NGV5 346 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 OR10R2Q8NGX6 335 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 OR4K15Q8NH41 348 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 OR5R1Q8NH85 324 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 MRPL30Q8TCC3 161 aaKnown RBP9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 RAB2BQ8WUD1 216 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 CCDC107Q8WV48 283 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 ARHGAP5-AS1Q96IT6 56 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 PECRQ9BY49 303 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 ATG5Q9H1Y0 275 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 TMEM133Q9H2Q1 129 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 MBNL3Q9NUK0 354 aaKnown RBP9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 TRAPPC2LQ9UL33 140 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 SPATA2Q9UM82 520 aa9.62□□□□□ -0.87
SQSTM1-206ENST00000466342 IGHV2-26A0A0B4J1V2 119 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 A0A1W2PRD5 423 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 A0A1W2PRF3 423 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 A0A1W2PRM7 423 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 C15orf65H3BRN8 121 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 TSPAN9O75954 239 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 SCGNO76038 276 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 NAPSAO96009 420 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 CD34P28906 385 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 TMBIM6P55061 237 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 HERPUD1Q15011 391 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 ZNF626Q68DY1 528 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 TRAT1Q6PIZ9 186 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 ZNF554Q86TJ5 538 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 BEND2Q8NDZ0 799 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms