RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 RSPO1Q2MKA7 263 aaPredicted RBP5.18□□□□□ -1.58
USP40-202ENST00000409945 ZNF404Q494X3 552 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 BCL2L15Q5TBC7 163 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 ZNF322Q6U7Q0 402 aaPredicted RBP5.18□□□□□ -1.58
USP40-202ENST00000409945 LRRC28Q86X40 367 aaPredicted RBP5.18□□□□□ -1.58
USP40-202ENST00000409945 SLC35F2Q8IXU6 374 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 MINDY2Q8NBR6 621 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 CCDC54Q8NEL0 328 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 OR51G2Q8NGK0 314 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 OR6Q1Q8NGQ2 317 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 ZNF418Q8TF45 676 aaPredicted RBP5.18□□□□□ -1.58
USP40-202ENST00000409945 ZNRF4Q8WWF5 429 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 TMEM158Q8WZ71 300 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 SLIRPQ9GZT3 109 aaKnown RBP5.18□□□□□ -1.58
USP40-202ENST00000409945 PLEKHA1Q9HB21 404 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 PATZ1Q9HBE1 687 aaKnown RBP5.18□□□□□ -1.58
USP40-202ENST00000409945 UFSP2Q9NUQ7 469 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 LRP12Q9Y561 859 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 CACNG2Q9Y698 323 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 DYSFO75923 2080 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 PPIAL4CA0A0B4J2A2 164 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 ZNF816-ZNF321PA0A0X1KG74 233 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 MLNRO43193 412 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 PFDN1O60925 122 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 DIRAS3O95661 229 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 CYB5R3P00387 301 aaPredicted RBP5.17□□□□□ -1.58
USP40-202ENST00000409945 SERPINA3P01011 423 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 PSMA1P25786 263 aaKnown RBP5.17□□□□□ -1.58
USP40-202ENST00000409945 CD40LGP29965 261 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 HTR1FP30939 366 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 IL2RGP31785 369 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 FAM3AP98173 230 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 RIPPLY1Q0D2K3 151 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 MLLT11Q13015 90 aaPredicted RBP5.17□□□□□ -1.58
USP40-202ENST00000409945 MICBQ29980 383 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 RBMS3Q6XE24 437 aaKnown RBP5.17□□□□□ -1.58
USP40-202ENST00000409945 YIPF7Q8N8F6 280 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 BBS1Q8NFJ9 593 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 OR52M1Q8NGK5 317 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 OR2T27Q8NH04 317 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 MCFD2Q8NI22 146 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 NANPQ8TBE9 248 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 CHPT1Q8WUD6 406 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 PHLDA1Q8WV24 401 aaPredicted RBP5.17□□□□□ -1.58
USP40-202ENST00000409945 RPL3LQ92901 407 aaKnown RBP5.17□□□□□ -1.58
USP40-202ENST00000409945 SGK3Q96BR1 496 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 OR8B4Q96RC9 309 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 NEK6Q9HC98 313 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 FGF20Q9NP95 211 aaPredicted RBP5.17□□□□□ -1.58
USP40-202ENST00000409945 CLN8Q9UBY8 286 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 LSM2Q9Y333 95 aaKnown RBP5.17□□□□□ -1.58
USP40-202ENST00000409945 EXOSC1Q9Y3B2 195 aaKnown RBP5.17□□□□□ -1.58
USP40-202ENST00000409945 FN1P02751 2386 aaKnown RBP5.17□□□□□ -1.58
USP40-202ENST00000409945 LOC100506127A0A0U1RQW1 187 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 PNMA8CA0A1B0GUJ8 204 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 hCG_38984A0A1B0GV85 526 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 A0A1B0GVI7 797 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 A0A1B0GWJ7 208 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 H0YL77 283 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 J3QRK9 145 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 BMPR1BO00238 502 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 TCF21O43680 179 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 SULT1C4O75897 302 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 OCM2P0CE71 109 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 OCMP0CE72 109 aaPredicted RBP5.17□□□□□ -1.58
USP40-202ENST00000409945 HAAOP46952 286 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 ACTA2P62736 377 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 ACTG2P63267 376 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 LCN2P80188 198 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 IL24Q13007 206 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 ZMYND11Q15326 602 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 SLC36A1Q7Z2H8 476 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 TRPT1Q86TN4 253 aaKnown RBP5.17□□□□□ -1.58
USP40-202ENST00000409945 NR2C2APQ86WQ0 139 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 PHC2Q8IXK0 858 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 OR10H4Q8NGA5 316 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 OR52I1Q8NGK6 324 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 HAVCR2Q8TDQ0 301 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 PIGCQ92535 297 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 OPALINQ96PE5 141 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 OR5M11Q96RB7 305 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 NXF2Q9GZY0 626 aaKnown RBP5.17□□□□□ -1.58
USP40-202ENST00000409945 PBOV1Q9GZY1 135 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 ISYNA1Q9NPH2 558 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 C1orf123Q9NWV4 160 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 NDUFB11Q9NX14 153 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 PRELID1Q9Y255 219 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 PEX16Q9Y5Y5 336 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 TANC2Q9HCD6 1990 aa5.17□□□□□ -1.58
USP40-202ENST00000409945 YLPM1P49750 1951 aaKnown RBP5.16□□□□□ -1.58
USP40-202ENST00000409945 DAPL1A0PJW8 107 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 CCDC182A6NF36 153 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 ANKRD61A6NGH8 418 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 OOEPA6NGQ2 149 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 NKX6-3A6NJ46 265 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 METTL15A6NJ78 407 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 OR5B21A6NL26 309 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 CEACAM18A8MTB9 384 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 LGALS8O00214 317 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 P2RY10O00398 339 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms