RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 COX4I2Q96KJ9 171 aa14.88□□□□□ -0.03
SDC1-203ENST00000403076 NECAP2Q9NVZ3 263 aa14.88□□□□□ -0.03
SDC1-203ENST00000403076 ARHGAP32A7KAX9 2087 aa14.88□□□□□ -0.03
SDC1-203ENST00000403076 IGHV2-70DA0A0C4DH43 119 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 hCG_1809904A0A1W2PP81 198 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 A0A1W2PPE2 198 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 A0A1W2PR64 198 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 A0A1W2PRV1 198 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 M0QYG6 137 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 SMAD7O15105 426 aaKnown RBP14.87□□□□□ -0.03
SDC1-203ENST00000403076 CTXN2P0C2S0 81 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 OMGP23515 440 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 RFX2P48378 723 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 ARF6P62330 175 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 CDK10Q15131 360 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 IGSF11Q5DX21 431 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 LINC01356Q8N9X3 169 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 GINS4Q9BRT9 223 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 PALMDQ9NP74 551 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 MMP26Q9NRE1 261 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 IDI2-AS1Q9NZ38 188 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 EHFQ9NZC4 300 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 POLR3KQ9Y2Y1 108 aaPredicted RBP14.87□□□□□ -0.03
SDC1-203ENST00000403076 SDCBPO00560 298 aaPredicted RBP14.87□□□□□ -0.03
SDC1-203ENST00000403076 IFNA6P05013 189 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 MSMBP08118 114 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 TBPP20226 339 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 NFYBP25208 207 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 FAUP35544 74 aaKnown RBP14.87□□□□□ -0.03
SDC1-203ENST00000403076 KLF9Q13886 244 aaPredicted RBP14.87□□□□□ -0.03
SDC1-203ENST00000403076 TMEM249Q2WGJ8 235 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 PRAMEF5Q5TYX0 476 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 OR2S2Q9NQN1 319 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 GNG12Q9UBI6 72 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 SLC23A1Q9UHI7 598 aa14.87□□□□□ -0.03
SDC1-203ENST00000403076 DSCAML1Q8TD84 2053 aa14.86□□□□□ -0.03
SDC1-203ENST00000403076 YLPM1P49750 1951 aaKnown RBP14.86□□□□□ -0.03
SDC1-203ENST00000403076 IGHV3-43A0A0B4J1X8 118 aa14.86□□□□□ -0.03
SDC1-203ENST00000403076 IGHV3-43DP0DP04 118 aa14.86□□□□□ -0.03
SDC1-203ENST00000403076 GZMKP49863 264 aa14.86□□□□□ -0.03
SDC1-203ENST00000403076 DLX6P56179 175 aa14.86□□□□□ -0.03
SDC1-203ENST00000403076 TSPAN5P62079 268 aa14.86□□□□□ -0.03
SDC1-203ENST00000403076 DCTN2Q13561 401 aaKnown RBP14.86□□□□□ -0.03
SDC1-203ENST00000403076 STEAP3Q658P3 488 aa14.86□□□□□ -0.03
SDC1-203ENST00000403076 OR52L2PQ8NGH6 319 aa14.86□□□□□ -0.03
SDC1-203ENST00000403076 OR10J5Q8NHC4 309 aa14.86□□□□□ -0.03
SDC1-203ENST00000403076 DEDD2Q8WXF8 326 aa14.86□□□□□ -0.03
SDC1-203ENST00000403076 DMRTB1Q96MA1 342 aa14.86□□□□□ -0.03
SDC1-203ENST00000403076 TINAGL1Q9GZM7 467 aaPredicted RBP14.86□□□□□ -0.03
SDC1-203ENST00000403076 MCUBQ9NWR8 336 aa14.86□□□□□ -0.03
SDC1-203ENST00000403076 CSMD2Q7Z408 3487 aa14.85□□□□□ -0.03
SDC1-203ENST00000403076 IGKV1-6A0A0C4DH72 117 aa14.85□□□□□ -0.03
SDC1-203ENST00000403076 CENPXA8MT69 81 aa14.85□□□□□ -0.03
SDC1-203ENST00000403076 NPIPB11E5RHQ5 1161 aa14.85□□□□□ -0.03
SDC1-203ENST00000403076 CD74P04233 296 aa14.85□□□□□ -0.03
SDC1-203ENST00000403076 AMY2AP04746 511 aa14.85□□□□□ -0.03
SDC1-203ENST00000403076 OR5H8P0DN80 308 aa14.85□□□□□ -0.03
SDC1-203ENST00000403076 FPR2P25090 351 aa14.85□□□□□ -0.03
SDC1-203ENST00000403076 DVL1P1P54792 670 aaPredicted RBP14.85□□□□□ -0.03
SDC1-203ENST00000403076 ERVFRD-1P60508 538 aa14.85□□□□□ -0.03
SDC1-203ENST00000403076 PAX2Q02962 417 aa14.85□□□□□ -0.03
SDC1-203ENST00000403076 DYRK1AQ13627 763 aa14.85□□□□□ -0.03
SDC1-203ENST00000403076 MEF2DQ14814 521 aa14.85□□□□□ -0.03
SDC1-203ENST00000403076 HERPUD1Q15011 391 aa14.85□□□□□ -0.03
SDC1-203ENST00000403076 HEPN1Q6WQI6 88 aa14.85□□□□□ -0.03
SDC1-203ENST00000403076 OR10V1Q8NGI7 309 aa14.85□□□□□ -0.03
SDC1-203ENST00000403076 OR4C16Q8NGL9 310 aa14.85□□□□□ -0.03
SDC1-203ENST00000403076 C1orf159Q96HA4 380 aa14.85□□□□□ -0.03
SDC1-203ENST00000403076 CABLES2Q9BTV7 478 aa14.85□□□□□ -0.03
SDC1-203ENST00000403076 HRASLSQ9HDD0 168 aa14.85□□□□□ -0.03
SDC1-203ENST00000403076 TRAV20A0A0B4J274 112 aa14.84□□□□□ -0.03
SDC1-203ENST00000403076 C17orf98A8MV24 154 aa14.84□□□□□ -0.03
SDC1-203ENST00000403076 DISC1C4P0D8 188 aa14.84□□□□□ -0.03
SDC1-203ENST00000403076 M0R1W7 72 aa14.84□□□□□ -0.03
SDC1-203ENST00000403076 F2RL2O00254 374 aa14.84□□□□□ -0.03
SDC1-203ENST00000403076 MMP23AO75900 390 aa14.84□□□□□ -0.03
SDC1-203ENST00000403076 TGFAP01135 160 aa14.84□□□□□ -0.03
SDC1-203ENST00000403076 ZBTB25P24278 435 aa14.84□□□□□ -0.03
SDC1-203ENST00000403076 CEACAM6P40199 344 aa14.84□□□□□ -0.03
SDC1-203ENST00000403076 DEFA1P59665 94 aa14.84□□□□□ -0.03
SDC1-203ENST00000403076 DEFA3P59666 94 aa14.84□□□□□ -0.03
SDC1-203ENST00000403076 HTD2P86397 168 aa14.84□□□□□ -0.03
SDC1-203ENST00000403076 IFITM3Q01628 133 aa14.84□□□□□ -0.03
SDC1-203ENST00000403076 METTL11BQ5VVY1 283 aa14.84□□□□□ -0.03
SDC1-203ENST00000403076 DCAF12L2Q5VW00 463 aa14.84□□□□□ -0.03
SDC1-203ENST00000403076 FAAP20Q6NZ36 180 aa14.84□□□□□ -0.03
SDC1-203ENST00000403076 ZNF782Q6ZMW2 699 aaPredicted RBP14.84□□□□□ -0.03
SDC1-203ENST00000403076 OVCH2Q7RTZ1 564 aa14.84□□□□□ -0.03
SDC1-203ENST00000403076 TMEM17Q86X19 198 aa14.84□□□□□ -0.03
SDC1-203ENST00000403076 CIARTQ8N365 385 aaPredicted RBP14.84□□□□□ -0.03
SDC1-203ENST00000403076 OR10A7Q8NGE5 316 aa14.84□□□□□ -0.03
SDC1-203ENST00000403076 OR4D10Q8NGI6 311 aa14.84□□□□□ -0.03
SDC1-203ENST00000403076 MSI2Q96DH6 328 aaKnown RBP14.84□□□□□ -0.03
SDC1-203ENST00000403076 LINC00574Q9H8X3 128 aa14.84□□□□□ -0.03
SDC1-203ENST00000403076 OR1A1Q9P1Q5 309 aa14.84□□□□□ -0.03
SDC1-203ENST00000403076 INSIG2Q9Y5U4 225 aa14.84□□□□□ -0.03
SDC1-203ENST00000403076 TRBV6-7A0A0A0MS04 114 aa14.83□□□□□ -0.04
SDC1-203ENST00000403076 IGHV4-31P0DP07 118 aa14.83□□□□□ -0.04
SDC1-203ENST00000403076 TMEM30BQ3MIR4 351 aa14.83□□□□□ -0.04
SDC1-203ENST00000403076 VAX1Q5SQQ9 334 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms