RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 PTX4Q96A99 478 aa17.56■□□□□ 0.4
CLN3-207ENST00000395653 LEUTXA8MZ59 168 aa17.55■□□□□ 0.4
CLN3-207ENST00000395653 SPINT2O43291 252 aa17.55■□□□□ 0.4
CLN3-207ENST00000395653 SMIM18P0DKX4 95 aa17.55■□□□□ 0.4
CLN3-207ENST00000395653 SLC2A2P11168 524 aaPredicted RBP17.55■□□□□ 0.4
CLN3-207ENST00000395653 RCC1P18754 421 aaPredicted RBP17.55■□□□□ 0.4
CLN3-207ENST00000395653 TMEM50BP56557 158 aa17.55■□□□□ 0.4
CLN3-207ENST00000395653 PLA2G7Q13093 441 aa17.55■□□□□ 0.4
CLN3-207ENST00000395653 TMEM30BQ3MIR4 351 aa17.55■□□□□ 0.4
CLN3-207ENST00000395653 SFXN4Q6P4A7 337 aa17.55■□□□□ 0.4
CLN3-207ENST00000395653 MMP28Q9H239 520 aa17.55■□□□□ 0.4
CLN3-207ENST00000395653 PSG11Q9UQ72 335 aa17.55■□□□□ 0.4
CLN3-207ENST00000395653 A0A0B4J203 849 aa17.55■□□□□ 0.4
CLN3-207ENST00000395653 BUB1B-PAK6H3BSN5 160 aa17.55■□□□□ 0.4
CLN3-207ENST00000395653 J3QR06 171 aa17.55■□□□□ 0.4
CLN3-207ENST00000395653 AIREO43918 545 aa17.55■□□□□ 0.4
CLN3-207ENST00000395653 NAPSAO96009 420 aa17.55■□□□□ 0.4
CLN3-207ENST00000395653 CRYBA1P05813 215 aa17.55■□□□□ 0.4
CLN3-207ENST00000395653 CEACAM3P40198 252 aa17.55■□□□□ 0.4
CLN3-207ENST00000395653 DYNLT3P51808 116 aa17.55■□□□□ 0.4
CLN3-207ENST00000395653 MXD1Q05195 221 aa17.55■□□□□ 0.4
CLN3-207ENST00000395653 FOXL1Q12952 345 aa17.55■□□□□ 0.4
CLN3-207ENST00000395653 RIMS4Q9H426 269 aaPredicted RBP17.55■□□□□ 0.4
CLN3-207ENST00000395653 GFOD1Q9NXC2 390 aa17.55■□□□□ 0.4
CLN3-207ENST00000395653 KCNIP1Q9NZI2 227 aa17.55■□□□□ 0.4
CLN3-207ENST00000395653 HILPDAQ9Y5L2 63 aa17.55■□□□□ 0.4
CLN3-207ENST00000395653 SDCBPO00560 298 aaPredicted RBP17.54■□□□□ 0.4
CLN3-207ENST00000395653 EFNB2P52799 333 aa17.54■□□□□ 0.4
CLN3-207ENST00000395653 LOXL3P58215 753 aa17.54■□□□□ 0.4
CLN3-207ENST00000395653 Q3ZCU0 254 aa17.54■□□□□ 0.4
CLN3-207ENST00000395653 Q6ZTK2 550 aa17.54■□□□□ 0.4
CLN3-207ENST00000395653 UBALD1Q8TB05 177 aa17.54■□□□□ 0.4
CLN3-207ENST00000395653 PIFOQ8TCI5 191 aa17.54■□□□□ 0.4
CLN3-207ENST00000395653 LEAP2Q969E1 77 aa17.54■□□□□ 0.4
CLN3-207ENST00000395653 ARHGAP5-AS1Q96IT6 56 aa17.54■□□□□ 0.4
CLN3-207ENST00000395653 TAF9BQ9HBM6 251 aa17.54■□□□□ 0.4
CLN3-207ENST00000395653 ABCB10Q9NRK6 738 aa17.54■□□□□ 0.4
CLN3-207ENST00000395653 DAPK2Q9UIK4 370 aa17.54■□□□□ 0.4
CLN3-207ENST00000395653 AMMECR1Q9Y4X0 333 aaPredicted RBP17.54■□□□□ 0.4
CLN3-207ENST00000395653 HBZP02008 142 aa17.53■□□□□ 0.4
CLN3-207ENST00000395653 CLEC2LP0C7M8 214 aa17.53■□□□□ 0.4
CLN3-207ENST00000395653 PLA1AQ53H76 456 aa17.53■□□□□ 0.4
CLN3-207ENST00000395653 PLAC9Q5JTB6 97 aa17.53■□□□□ 0.4
CLN3-207ENST00000395653 C8orf31Q8N9H6 132 aa17.53■□□□□ 0.4
CLN3-207ENST00000395653 OR13F1Q8NGS4 319 aa17.53■□□□□ 0.4
CLN3-207ENST00000395653 PECRQ9BY49 303 aa17.53■□□□□ 0.4
CLN3-207ENST00000395653 TRBV6-6A0A0A6YYG2 114 aa17.52■□□□□ 0.4
CLN3-207ENST00000395653 METTL21EPA6NDL7 271 aa17.52■□□□□ 0.4
CLN3-207ENST00000395653 IGHV3-7P01780 117 aa17.52■□□□□ 0.4
CLN3-207ENST00000395653 AWAT1Q58HT5 328 aa17.52■□□□□ 0.4
CLN3-207ENST00000395653 ZNF880Q6PDB4 577 aa17.52■□□□□ 0.4
CLN3-207ENST00000395653 C12orf54Q6X4T0 127 aa17.52■□□□□ 0.4
CLN3-207ENST00000395653 LIAT1Q6ZQX7 453 aa17.52■□□□□ 0.4
CLN3-207ENST00000395653 MOB1BQ7L9L4 216 aa17.52■□□□□ 0.4
CLN3-207ENST00000395653 OR1L1Q8NH94 360 aa17.52■□□□□ 0.4
CLN3-207ENST00000395653 RAB3CQ96E17 227 aa17.52■□□□□ 0.4
CLN3-207ENST00000395653 CHMP1AQ9HD42 196 aaPredicted RBP17.52■□□□□ 0.4
CLN3-207ENST00000395653 C1RLQ9NZP8 487 aa17.52■□□□□ 0.4
CLN3-207ENST00000395653 AK3Q9UIJ7 227 aa17.52■□□□□ 0.4
CLN3-207ENST00000395653 TENM1Q9UKZ4 2725 aa17.52■□□□□ 0.39
CLN3-207ENST00000395653 POM121CA8CG34 1229 aa17.51■□□□□ 0.39
CLN3-207ENST00000395653 OOSP1A8MZH6 123 aa17.51■□□□□ 0.39
CLN3-207ENST00000395653 LY6LH3BQJ8 138 aa17.51■□□□□ 0.39
CLN3-207ENST00000395653 RAB27BO00194 218 aa17.51■□□□□ 0.39
CLN3-207ENST00000395653 TMEM127O75204 238 aa17.51■□□□□ 0.39
CLN3-207ENST00000395653 NDUFA7O95182 113 aa17.51■□□□□ 0.39
CLN3-207ENST00000395653 GNG10P50151 68 aa17.51■□□□□ 0.39
CLN3-207ENST00000395653 SCAND1P57086 179 aa17.51■□□□□ 0.39
CLN3-207ENST00000395653 HMGN3Q15651 99 aa17.51■□□□□ 0.39
CLN3-207ENST00000395653 LY6EQ16553 131 aa17.51■□□□□ 0.39
CLN3-207ENST00000395653 MOGAT2Q3SYC2 334 aa17.51■□□□□ 0.39
CLN3-207ENST00000395653 TPTE2P1Q5T6R2 138 aa17.51■□□□□ 0.39
CLN3-207ENST00000395653 PRR18Q8N4B5 295 aa17.51■□□□□ 0.39
CLN3-207ENST00000395653 LINC00311Q8N616 119 aa17.51■□□□□ 0.39
CLN3-207ENST00000395653 OR10R2Q8NGX6 335 aa17.51■□□□□ 0.39
CLN3-207ENST00000395653 FUNDC2Q9BWH2 189 aa17.51■□□□□ 0.39
CLN3-207ENST00000395653 MRPS26Q9BYN8 205 aaKnown RBP17.51■□□□□ 0.39
CLN3-207ENST00000395653 C12orf4Q9NQ89 552 aa17.51■□□□□ 0.39
CLN3-207ENST00000395653 TCF19Q9Y242 345 aa17.51■□□□□ 0.39
CLN3-207ENST00000395653 IGHV3-43A0A0B4J1X8 118 aa17.5■□□□□ 0.39
CLN3-207ENST00000395653 IGHV3-43DP0DP04 118 aa17.5■□□□□ 0.39
CLN3-207ENST00000395653 ARHGDIBP52566 201 aa17.5■□□□□ 0.39
CLN3-207ENST00000395653 RAG2P55895 527 aa17.5■□□□□ 0.39
CLN3-207ENST00000395653 RELBQ01201 579 aa17.5■□□□□ 0.39
CLN3-207ENST00000395653 DHRS7BQ6IAN0 325 aaPredicted RBP17.5■□□□□ 0.39
CLN3-207ENST00000395653 Q6ZPA2 131 aa17.5■□□□□ 0.39
CLN3-207ENST00000395653 RAB18Q9NP72 206 aa17.5■□□□□ 0.39
CLN3-207ENST00000395653 GNG12Q9UBI6 72 aa17.5■□□□□ 0.39
CLN3-207ENST00000395653 SNRPBP14678 240 aaKnown RBP17.49■□□□□ 0.39
CLN3-207ENST00000395653 RAB13P51153 203 aa17.49■□□□□ 0.39
CLN3-207ENST00000395653 HTD2P86397 168 aa17.49■□□□□ 0.39
CLN3-207ENST00000395653 MADCAM1Q13477 382 aa17.49■□□□□ 0.39
CLN3-207ENST00000395653 CCDC144NLQ6NUI1 221 aa17.49■□□□□ 0.39
CLN3-207ENST00000395653 OR10X1Q8NGY0 326 aa17.49■□□□□ 0.39
CLN3-207ENST00000395653 OR4F5Q8NH21 305 aa17.49■□□□□ 0.39
CLN3-207ENST00000395653 LGALS14Q8TCE9 139 aa17.49■□□□□ 0.39
CLN3-207ENST00000395653 TAF15Q92804 592 aaKnown RBP eCLIP17.49■□□□□ 0.39
CLN3-207ENST00000395653 CMSS1Q9BQ75 279 aaKnown RBP17.49■□□□□ 0.39
CLN3-207ENST00000395653 HDHD3Q9BSH5 251 aaPredicted RBP17.49■□□□□ 0.39
CLN3-207ENST00000395653 ABRACLQ9P1F3 81 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms