RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 SNX22Q96L94 193 aa3.45□□□□□ -1.86
MCF2-201ENST00000338585 CABLES2Q9BTV7 478 aa3.45□□□□□ -1.86
MCF2-201ENST00000338585 ZNF436Q9C0F3 470 aaPredicted RBP3.45□□□□□ -1.86
MCF2-201ENST00000338585 TMEM106BQ9NUM4 274 aa3.45□□□□□ -1.86
MCF2-201ENST00000338585 PIPOXQ9P0Z9 390 aa3.45□□□□□ -1.86
MCF2-201ENST00000338585 AKAP6Q13023 2319 aa3.45□□□□□ -1.86
MCF2-201ENST00000338585 USF3Q68DE3 2245 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 FLNCQ14315 2725 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 IGHV1-69-2A0A0G2JMI3 117 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 ODAMA1E959 279 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 FAM172BPA6NC97 362 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 LRRC30A6NM36 301 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 G3V3Q6 166 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 H7C1Q1 480 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 K7N7A8 449 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 LGALS8O00214 317 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 TUSC2O75896 110 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 SLC22A5O76082 557 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 SFT2D2O95562 160 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 HBZP02008 142 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 CTSDP07339 412 aaPredicted RBP3.44□□□□□ -1.86
MCF2-201ENST00000338585 DANCRP0C864 163 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 ANXA3P12429 323 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 COL8A2P25067 703 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 CD34P28906 385 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 GNRHRP30968 328 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 PIGPP57054 158 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 TAS2R31P59538 309 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 HERV-K104P61576 105 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 DHODHQ02127 395 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 GNMTQ14749 295 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 LTC4SQ16873 150 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 SP6Q3SY56 376 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 TMEM128Q5BJH2 165 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 LY6G6FQ5SQ64 297 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 UTF1Q5T230 341 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 C11orf71Q6IPW1 123 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 LYPD2Q6UXB3 125 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 ZNF788Q6ZQV5 615 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 KCTD9Q7L273 389 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 MOB1BQ7L9L4 216 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 H1FOOQ8IZA3 346 aaPredicted RBP3.44□□□□□ -1.86
MCF2-201ENST00000338585 OR52L2PQ8NGH6 319 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 OR10J5Q8NHC4 309 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 SDSLQ96GA7 329 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 DLL4Q9NR61 685 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 CCL28Q9NRJ3 127 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 C14orf166Q9Y224 244 aaKnown RBP3.44□□□□□ -1.86
MCF2-201ENST00000338585 DOPEY1Q5JWR5 2465 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 LRBAP50851 2863 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 PPIAL4EA0A075B759 164 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 IGHV3-43A0A0B4J1X8 118 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 TEX13DA0A0J9YY54 714 aaPredicted RBP3.44□□□□□ -1.86
MCF2-201ENST00000338585 PPIAL4DF5H284 164 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 HSD17B6O14756 317 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 MGST3O14880 152 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 TMPRSS2O15393 492 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 TNFSF12O43508 249 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 ADAP1O75689 374 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 DUS4LO95620 317 aaKnown RBP3.44□□□□□ -1.86
MCF2-201ENST00000338585 DIRAS3O95661 229 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 CTXN2P0C2S0 81 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 PPIAL4FP0DN26 164 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 IGHV3-43DP0DP04 118 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 MUC1P15941 1255 aaPredicted RBP3.44□□□□□ -1.86
MCF2-201ENST00000338585 OMGP23515 440 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 KCNJ3P48549 501 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 P2RX3P56373 397 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 SRSF1Q07955 248 aaKnown RBP eCLIP3.44□□□□□ -1.86
MCF2-201ENST00000338585 FAHD2BQ6P2I3 314 aaPredicted RBP3.44□□□□□ -1.86
MCF2-201ENST00000338585 MEX3BQ6ZN04 569 aaKnown RBP3.44□□□□□ -1.86
MCF2-201ENST00000338585 ZNF818PQ6ZRF7 136 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 NOXA1Q86UR1 476 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 ZNF561Q8N587 486 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 SPICQ8N5J4 248 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 OR11H4Q8NGC9 324 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 MITD1Q8WV92 249 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 FAHD2AQ96GK7 314 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 RSRP1Q9BUV0 290 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 SLC5A7Q9GZV3 580 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 UBTD1Q9HAC8 227 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 SEBOXQ9HB31 216 aaPredicted RBP3.44□□□□□ -1.86
MCF2-201ENST00000338585 SLC2A9Q9NRM0 540 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 CBLN4Q9NTU7 201 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 RDH8Q9NYR8 311 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 KCNIP1Q9NZI2 227 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 CTSZQ9UBR2 303 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 FBXO9Q9UK97 447 aaPredicted RBP3.44□□□□□ -1.86
MCF2-201ENST00000338585 PCDHB10Q9UN67 800 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 LAMP3Q9UQV4 416 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 PPIAL4AQ9Y536 164 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 TANC2Q9HCD6 1990 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 MYO18BQ8IUG5 2567 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 COL12A1Q99715 3063 aa3.44□□□□□ -1.86
MCF2-201ENST00000338585 CRYM-AS1A6NIL9 109 aa3.43□□□□□ -1.86
MCF2-201ENST00000338585 A6NNC1 897 aa3.43□□□□□ -1.86
MCF2-201ENST00000338585 MPTX1A8MV57 137 aa3.43□□□□□ -1.86
MCF2-201ENST00000338585 NPIPB11E5RHQ5 1161 aa3.43□□□□□ -1.86
MCF2-201ENST00000338585 C15orf65H3BRN8 121 aa3.43□□□□□ -1.86
MCF2-201ENST00000338585 SIGLEC5O15389 551 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms