RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 TICRRQ7Z2Z1 1910 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 DTD1Q8TEA8 209 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 CORTO00230 105 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 KLF4O43474 513 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 PLPPR5Q32ZL2 321 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 OR2V2Q96R30 315 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 POLR2GP62487 172 aaKnown RBP eCLIP9□□□□□ -0.97
CCDC88A-202ENST00000336838 UBE2L3P68036 154 aaKnown RBP9□□□□□ -0.97
CCDC88A-202ENST00000336838 PRSS41Q7RTY9 318 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 SPNS2Q8IVW8 549 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 GNB4Q9HAV0 340 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 TRAV38-1A0A0B4J264 116 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 K7EQS6 105 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 TMEM108Q6UXF1 575 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 CTHRC1Q96CG8 243 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 RBM14Q96PK6 669 aaKnown RBP9□□□□□ -0.97
CCDC88A-202ENST00000336838 TUBA4BQ9H853 241 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 MUC1P15941 1255 aaPredicted RBP9□□□□□ -0.97
CCDC88A-202ENST00000336838 MPZP25189 248 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 GNB1P62873 340 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 IFITM2Q01629 132 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 SP7Q8TDD2 431 aaPredicted RBP9□□□□□ -0.97
CCDC88A-202ENST00000336838 SFXN3Q9BWM7 321 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 COL25A1Q9BXS0 654 aaPredicted RBP9□□□□□ -0.97
CCDC88A-202ENST00000336838 P4HTMQ9NXG6 502 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 KCNE5Q9UJ90 142 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 PILRAQ9UKJ1 303 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 LNP1A1A4G5 178 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 M0R1B8 84 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 SOCS1O15524 211 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 FCGR3AP08637 254 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 CEACAM21Q3KPI0 293 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 IGHV3-15A0A0B4J1V0 119 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 PRF1P14222 555 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 MRPL30Q8TCC3 161 aaKnown RBP9□□□□□ -0.97
CCDC88A-202ENST00000336838 GPA33Q99795 319 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 TANC1Q9C0D5 1861 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 M0R2Z0 102 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 ADAD2Q8NCV1 583 aaKnown RBP9□□□□□ -0.97
CCDC88A-202ENST00000336838 CRISPLD2Q9H0B8 497 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 ABCA1O95477 2261 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 HPRT1P00492 218 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 SLC25A5P05141 298 aaKnown RBP9□□□□□ -0.97
CCDC88A-202ENST00000336838 KIR3DL2P43630 455 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 FGF12P61328 243 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 HLA-DRB5Q30154 266 aa9□□□□□ -0.97
CCDC88A-202ENST00000336838 MRPL24Q96A35 216 aaKnown RBP9□□□□□ -0.97
CCDC88A-202ENST00000336838 MKRN2OSH3BPM6 223 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 COX5BP10606 129 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 CA6P23280 308 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 LCN2P80188 198 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 LINC00518Q8N0U6 118 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 OR2Z1Q8NG97 314 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 ZNF596Q8TC21 504 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 TRMT61AQ96FX7 289 aaKnown RBP8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 SLC31A2O15432 143 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 CIDEAO60543 219 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 KIAA1549LQ6ZVL6 1849 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 IGKV1-8A0A0C4DH67 115 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 B4E171 279 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 TCAPO15273 167 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 UPK3AO75631 287 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 HIST1H1BP16401 226 aaKnown RBP8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 BMP5P22003 454 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 CDX1P47902 265 aaPredicted RBP8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 HFEQ30201 348 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 C9orf40Q8IXQ3 194 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 KCNK17Q96T54 332 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 PKIBQ9C010 78 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 PSG11Q9UQ72 335 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 MRPS18BQ9Y676 258 aaKnown RBP8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 SPTBN2O15020 2390 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 TRIOBPQ9H2D6 2365 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 HOXB3P14651 431 aaPredicted RBP8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 ATP6V0CP27449 155 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 YBX1P67809 324 aaKnown RBP8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 IGLV3-21P80748 117 aaPredicted RBP8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 GUCA2BQ16661 112 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 OR2B11Q5JQS5 317 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 CYB561D1Q8N8Q1 229 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 SLC25A38Q96DW6 304 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 CFDP00746 253 aaPredicted RBP8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 P01737 135 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 HOXD4P09016 255 aaPredicted RBP8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 CCL11P51671 97 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 METAP1P53582 386 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 HIKESHIQ53FT3 197 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 FHL5Q5TD97 284 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 TMEM230Q96A57 120 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 ADAT3Q96EY9 351 aaPredicted RBP8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 ATP23Q9Y6H3 246 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 GCM2O75603 506 aaPredicted RBP8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 SMAGPQ0VAQ4 97 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 PQLC2Q6ZP29 291 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 ZNF519Q8TB69 540 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 COL4A5P29400 1685 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 ZNF106Q9H2Y7 1883 aaKnown RBP8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 OR2M5A3KFT3 312 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 FCGR3BO75015 233 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 NHLH1Q02575 133 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms