RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 K7EQS6 105 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 RECKO95980 971 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 GLULP15104 373 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 SLC35B1P78383 322 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 OR11H7Q8NGC8 314 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 WDR13Q9H1Z4 485 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 SIRT5Q9NXA8 310 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 PPP1CCP36873 323 aaKnown RBP12.61□□□□□ -0.39
COL7A1-201ENST00000328333 ONECUT1Q9UBC0 465 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 NKX2-2O95096 273 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 ORM2P19652 201 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 EPHA8P29322 1005 aaPredicted RBP12.61□□□□□ -0.39
COL7A1-201ENST00000328333 LSM10Q969L4 123 aaKnown RBP12.61□□□□□ -0.39
COL7A1-201ENST00000328333 HES7Q9BYE0 225 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 C11orf68Q9H3H3 251 aaKnown RBP12.61□□□□□ -0.39
COL7A1-201ENST00000328333 IL11RAQ14626 422 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 MRPL54Q6P161 138 aaKnown RBP12.61□□□□□ -0.39
COL7A1-201ENST00000328333 SPNS2Q8IVW8 549 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 OR2Z1Q8NG97 314 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 NRSN2Q9GZP1 204 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 NPIPB6E9PJ23 425 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 SFTPA2Q8IWL1 248 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 SFTPA1Q8IWL2 248 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 NDUFS8O00217 210 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 OGG1O15527 345 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 LCN2P80188 198 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 TMEM190Q8WZ59 177 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 FAM90A26D6RGX4 464 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 TMEM262E9PQX1 116 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 GNG7O60262 68 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 ATP5IP56385 69 aaPredicted RBP12.61□□□□□ -0.39
COL7A1-201ENST00000328333 KCNE5Q9UJ90 142 aa12.61□□□□□ -0.39
COL7A1-201ENST00000328333 TRPM7Q96QT4 1865 aa12.6□□□□□ -0.39
COL7A1-201ENST00000328333 H0Y980 276 aa12.6□□□□□ -0.39
COL7A1-201ENST00000328333 CHST1O43916 411 aa12.6□□□□□ -0.39
COL7A1-201ENST00000328333 ZCCHC14Q8WYQ9 949 aaKnown RBP12.6□□□□□ -0.39
COL7A1-201ENST00000328333 ELSPBP1Q96BH3 223 aa12.6□□□□□ -0.39
COL7A1-201ENST00000328333 GGACTQ9BVM4 153 aa12.6□□□□□ -0.39
COL7A1-201ENST00000328333 CEACAM16Q2WEN9 425 aa12.6□□□□□ -0.39
COL7A1-201ENST00000328333 ZNF788Q6ZQV5 615 aa12.6□□□□□ -0.39
COL7A1-201ENST00000328333 FOXB1Q99853 325 aa12.6□□□□□ -0.39
COL7A1-201ENST00000328333 IGHV3-9P01782 118 aa12.6□□□□□ -0.39
COL7A1-201ENST00000328333 CCSMST1Q4G0I0 132 aa12.6□□□□□ -0.39
COL7A1-201ENST00000328333 OR8I2Q8N0Y5 310 aa12.6□□□□□ -0.39
COL7A1-201ENST00000328333 CISD1Q9NZ45 108 aaKnown RBP12.6□□□□□ -0.39
COL7A1-201ENST00000328333 TUBD1Q9UJT1 453 aa12.6□□□□□ -0.39
COL7A1-201ENST00000328333 TRAV9-1A0A075B6T8 112 aa12.6□□□□□ -0.39
COL7A1-201ENST00000328333 VENTXO95231 258 aa12.6□□□□□ -0.39
COL7A1-201ENST00000328333 F11P03951 625 aa12.6□□□□□ -0.39
COL7A1-201ENST00000328333 ZGLP1P0C6A0 271 aa12.6□□□□□ -0.39
COL7A1-201ENST00000328333 EWSR1Q01844 656 aaKnown RBP eCLIP12.6□□□□□ -0.39
COL7A1-201ENST00000328333 OR4P4Q8NGL7 312 aa12.6□□□□□ -0.39
COL7A1-201ENST00000328333 BADQ92934 168 aa12.6□□□□□ -0.39
COL7A1-201ENST00000328333 LYZL6O75951 148 aa12.6□□□□□ -0.39
COL7A1-201ENST00000328333 AGERQ15109 404 aa12.6□□□□□ -0.39
COL7A1-201ENST00000328333 MRPL16Q9NX20 251 aaKnown RBP12.6□□□□□ -0.39
COL7A1-201ENST00000328333 MYO18BQ8IUG5 2567 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 CFDP00746 253 aaPredicted RBP12.59□□□□□ -0.39
COL7A1-201ENST00000328333 RAXQ9Y2V3 346 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 CLDN16Q9Y5I7 305 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 SOX21Q9Y651 276 aaPredicted RBP12.59□□□□□ -0.39
COL7A1-201ENST00000328333 KCNE3Q9Y6H6 103 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 NYNRINQ9P2P1 1898 aaKnown RBP12.59□□□□□ -0.39
COL7A1-201ENST00000328333 NMBP08949 121 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 FZD5Q13467 585 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 RARRES2Q99969 163 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 SOCS7O14512 581 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 OR4A8P0C604 315 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 GZMHP20718 246 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 IBA57Q5T440 356 aaKnown RBP12.59□□□□□ -0.39
COL7A1-201ENST00000328333 C19orf67A6NJJ6 358 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 PMELP40967 661 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 TMEM30AQ9NV96 361 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 NIT1Q86X76 327 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 OR1L8Q8NGR8 309 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 MAP1LC3AQ9H492 121 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 RNF122Q9H9V4 155 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 A0A1B0GW15 77 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 RNF133Q8WVZ7 376 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 ORAI1Q96D31 301 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 AQP10Q96PS8 301 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 NPTNQ9Y639 398 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 TMEM250H0YL14 139 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 KLKB1P03952 638 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 SPANXN1Q5VSR9 72 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 ZNF502Q8TBZ5 544 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 CNRIP1Q96F85 164 aaPredicted RBP12.59□□□□□ -0.39
COL7A1-201ENST00000328333 CCL26Q9Y258 94 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 S1PR2O95136 353 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 POLR2GP62487 172 aaKnown RBP eCLIP12.59□□□□□ -0.39
COL7A1-201ENST00000328333 ZNF117Q03924 483 aa12.59□□□□□ -0.39
COL7A1-201ENST00000328333 EIF3IQ13347 325 aaKnown RBP12.59□□□□□ -0.39
COL7A1-201ENST00000328333 C17orf47Q8NEP4 570 aa12.58□□□□□ -0.39
COL7A1-201ENST00000328333 Q8WTZ3 238 aa12.58□□□□□ -0.39
COL7A1-201ENST00000328333 TRAV38-1A0A0B4J264 116 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 CDX4O14627 284 aaPredicted RBP12.58□□□□□ -0.4
COL7A1-201ENST00000328333 CKS2P33552 79 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 RIPPLY2Q5TAB7 128 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 ZNF880Q6PDB4 577 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 ZNF665Q9H7R5 613 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms