RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 DHRSXQ8N5I4 330 aa12.82□□□□□ -0.36
CLN3-264ENST00000637985 CHPT1Q8WUD6 406 aa12.82□□□□□ -0.36
CLN3-264ENST00000637985 CYGBQ8WWM9 190 aa12.82□□□□□ -0.36
CLN3-264ENST00000637985 SMIM19Q96E16 107 aa12.82□□□□□ -0.36
CLN3-264ENST00000637985 TMEM80Q96HE8 168 aa12.82□□□□□ -0.36
CLN3-264ENST00000637985 NR1H4Q96RI1 486 aaPredicted RBP12.82□□□□□ -0.36
CLN3-264ENST00000637985 BARHL1Q9BZE3 327 aa12.82□□□□□ -0.36
CLN3-264ENST00000637985 TMEM138Q9NPI0 162 aa12.82□□□□□ -0.36
CLN3-264ENST00000637985 CHCHD3Q9NX63 227 aaKnown RBP12.82□□□□□ -0.36
CLN3-264ENST00000637985 TRAV24A0A0B4J272 114 aa12.81□□□□□ -0.36
CLN3-264ENST00000637985 KBTBD11-OT1A0A1B0GTJ5 212 aa12.81□□□□□ -0.36
CLN3-264ENST00000637985 M0QZK8 103 aa12.81□□□□□ -0.36
CLN3-264ENST00000637985 TOR1AO14656 332 aa12.81□□□□□ -0.36
CLN3-264ENST00000637985 C21orf33P30042 268 aaPredicted RBP12.81□□□□□ -0.36
CLN3-264ENST00000637985 ADARB1P78563 741 aaKnown RBP12.81□□□□□ -0.36
CLN3-264ENST00000637985 LRRC36Q1X8D7 754 aa12.81□□□□□ -0.36
CLN3-264ENST00000637985 C17orf58Q2M2W7 97 aa12.81□□□□□ -0.36
CLN3-264ENST00000637985 PAN3Q58A45 887 aaKnown RBP12.81□□□□□ -0.36
CLN3-264ENST00000637985 OR52N1Q8NH53 320 aa12.81□□□□□ -0.36
CLN3-264ENST00000637985 TM2D3Q9BRN9 247 aa12.81□□□□□ -0.36
CLN3-264ENST00000637985 FAM192AQ9GZU8 254 aa12.81□□□□□ -0.36
CLN3-264ENST00000637985 PPIL3Q9H2H8 161 aaKnown RBP12.81□□□□□ -0.36
CLN3-264ENST00000637985 ZNF286AQ9HBT8 521 aa12.81□□□□□ -0.36
CLN3-264ENST00000637985 ING3Q9NXR8 418 aa12.81□□□□□ -0.36
CLN3-264ENST00000637985 IL36GQ9NZH8 169 aa12.81□□□□□ -0.36
CLN3-264ENST00000637985 SIRT4Q9Y6E7 314 aaPredicted RBP12.81□□□□□ -0.36
CLN3-264ENST00000637985 HSPE1-MOB4S4R3N1 261 aa12.81□□□□□ -0.36
CLN3-264ENST00000637985 BUB1B-PAK6H3BSN5 160 aa12.8□□□□□ -0.36
CLN3-264ENST00000637985 LY86O95711 162 aa12.8□□□□□ -0.36
CLN3-264ENST00000637985 CGB3P0DN86 165 aa12.8□□□□□ -0.36
CLN3-264ENST00000637985 CGB7P0DN87 165 aa12.8□□□□□ -0.36
CLN3-264ENST00000637985 BDKRB2P30411 391 aa12.8□□□□□ -0.36
CLN3-264ENST00000637985 ZNF93P35789 620 aaPredicted RBP12.8□□□□□ -0.36
CLN3-264ENST00000637985 GDNFP39905 211 aa12.8□□□□□ -0.36
CLN3-264ENST00000637985 HLA-DRB5Q30154 266 aa12.8□□□□□ -0.36
CLN3-264ENST00000637985 NHLRC3Q5JS37 347 aa12.8□□□□□ -0.36
CLN3-264ENST00000637985 COMMD1Q8N668 190 aa12.8□□□□□ -0.36
CLN3-264ENST00000637985 NOL4LQ96MY1 436 aaPredicted RBP12.8□□□□□ -0.36
CLN3-264ENST00000637985 METTL9Q9H1A3 318 aa12.8□□□□□ -0.36
CLN3-264ENST00000637985 IFT22Q9H7X7 185 aa12.8□□□□□ -0.36
CLN3-264ENST00000637985 LINC00574Q9H8X3 128 aa12.8□□□□□ -0.36
CLN3-264ENST00000637985 PCDHB16Q9NRJ7 776 aa12.8□□□□□ -0.36
CLN3-264ENST00000637985 PAK1IP1Q9NWT1 392 aaPredicted RBP12.8□□□□□ -0.36
CLN3-264ENST00000637985 MEIKINA0A087WXM9 373 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 FAM172BPA6NC97 362 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 OOSP1A8MZH6 123 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 HSPB6O14558 160 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 GPX5O75715 221 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 HTR3BO95264 441 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 CSTBP04080 98 aaKnown RBP12.79□□□□□ -0.36
CLN3-264ENST00000637985 RCN1Q15293 331 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 DEFB136Q30KP8 78 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 PIGYQ3MUY2 71 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 ZNF260Q3ZCT1 412 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 YIF1BQ5BJH7 314 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 DDI2Q5TDH0 399 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 DMKNQ6E0U4 476 aaPredicted RBP12.79□□□□□ -0.36
CLN3-264ENST00000637985 CCDC144NLQ6NUI1 221 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 LINC00596Q86U02 117 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 OR10K1Q8NGX5 313 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 OR8U1Q8NH10 309 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 OR9G1Q8NH87 305 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 GGHQ92820 318 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 GHSRQ92847 366 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 KIRREL1Q96J84 757 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 S100A13Q99584 98 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 DCLRE1BQ9H816 532 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 CLEC2DQ9UHP7 191 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 KIF25Q9UIL4 384 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 ING4Q9UNL4 249 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 ST3GAL6Q9Y274 331 aa12.79□□□□□ -0.36
CLN3-264ENST00000637985 TRBV5-5A0A0J9YX44 114 aa12.78□□□□□ -0.36
CLN3-264ENST00000637985 EFCAB10A6NFE3 127 aa12.78□□□□□ -0.36
CLN3-264ENST00000637985 LY6LH3BQJ8 138 aa12.78□□□□□ -0.36
CLN3-264ENST00000637985 ZNF780AO75290 641 aaPredicted RBP12.78□□□□□ -0.36
CLN3-264ENST00000637985 CDRT1O95170 752 aa12.78□□□□□ -0.36
CLN3-264ENST00000637985 LALBAP00709 142 aa12.78□□□□□ -0.36
CLN3-264ENST00000637985 IGFBP3P17936 291 aaPredicted RBP12.78□□□□□ -0.36
CLN3-264ENST00000637985 NFYBP25208 207 aa12.78□□□□□ -0.36
CLN3-264ENST00000637985 GLP1RP43220 463 aa12.78□□□□□ -0.36
CLN3-264ENST00000637985 ST3GAL4Q11206 333 aa12.78□□□□□ -0.36
CLN3-264ENST00000637985 RIPK1Q13546 671 aa12.78□□□□□ -0.36
CLN3-264ENST00000637985 KIR2DS1Q14954 304 aa12.78□□□□□ -0.36
CLN3-264ENST00000637985 Q499Y3 187 aa12.78□□□□□ -0.36
CLN3-264ENST00000637985 TPTE2P1Q5T6R2 138 aa12.78□□□□□ -0.36
CLN3-264ENST00000637985 RSBN1Q5VWQ0 802 aaPredicted RBP12.78□□□□□ -0.36
CLN3-264ENST00000637985 ZNF485Q8NCK3 441 aa12.78□□□□□ -0.36
CLN3-264ENST00000637985 OR10A7Q8NGE5 316 aa12.78□□□□□ -0.36
CLN3-264ENST00000637985 OR13A1Q8NGR1 328 aa12.78□□□□□ -0.36
CLN3-264ENST00000637985 CALYQ9NYX4 217 aa12.78□□□□□ -0.36
CLN3-264ENST00000637985 IDI2-AS1Q9NZ38 188 aa12.78□□□□□ -0.36
CLN3-264ENST00000637985 CNOT2Q9NZN8 540 aaKnown RBP12.78□□□□□ -0.36
CLN3-264ENST00000637985 CKLFQ9UBR5 152 aa12.78□□□□□ -0.36
CLN3-264ENST00000637985 AMMECR1Q9Y4X0 333 aaPredicted RBP12.78□□□□□ -0.36
CLN3-264ENST00000637985 NPIPB11E5RHQ5 1161 aa12.77□□□□□ -0.37
CLN3-264ENST00000637985 IL1AP01583 271 aa12.77□□□□□ -0.37
CLN3-264ENST00000637985 CAPGP40121 348 aa12.77□□□□□ -0.37
CLN3-264ENST00000637985 MNDAP41218 407 aa12.77□□□□□ -0.37
CLN3-264ENST00000637985 RBM11P57052 281 aaKnown RBP12.77□□□□□ -0.37
CLN3-264ENST00000637985 TAS2R43P59537 309 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms