RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 NEDD8Q15843 81 aa14.85□□□□□ -0.03
CLN3-259ENST00000637551 C17orf58Q2M2W7 97 aa14.85□□□□□ -0.03
CLN3-259ENST00000637551 C22orf42Q6IC83 251 aa14.85□□□□□ -0.03
CLN3-259ENST00000637551 ZNF782Q6ZMW2 699 aaPredicted RBP14.85□□□□□ -0.03
CLN3-259ENST00000637551 MOB1BQ7L9L4 216 aa14.85□□□□□ -0.03
CLN3-259ENST00000637551 DTX3Q8N9I9 347 aa14.85□□□□□ -0.03
CLN3-259ENST00000637551 OR13A1Q8NGR1 328 aa14.85□□□□□ -0.03
CLN3-259ENST00000637551 NEK7Q8TDX7 302 aa14.85□□□□□ -0.03
CLN3-259ENST00000637551 AJUBAQ96IF1 538 aa14.85□□□□□ -0.03
CLN3-259ENST00000637551 KIRREL1Q96J84 757 aa14.85□□□□□ -0.03
CLN3-259ENST00000637551 MBNL3Q9NUK0 354 aaKnown RBP14.85□□□□□ -0.03
CLN3-259ENST00000637551 ETAA1Q9NY74 926 aa14.85□□□□□ -0.03
CLN3-259ENST00000637551 VPREB3Q9UKI3 123 aa14.85□□□□□ -0.03
CLN3-259ENST00000637551 MGAT4AQ9UM21 535 aa14.85□□□□□ -0.03
CLN3-259ENST00000637551 SCGNO76038 276 aa14.84□□□□□ -0.03
CLN3-259ENST00000637551 HKR1P10072 659 aa14.84□□□□□ -0.03
CLN3-259ENST00000637551 CD36P16671 472 aa14.84□□□□□ -0.03
CLN3-259ENST00000637551 CEACAM3P40198 252 aa14.84□□□□□ -0.03
CLN3-259ENST00000637551 ARHGDIBP52566 201 aa14.84□□□□□ -0.03
CLN3-259ENST00000637551 ARL6IP1Q15041 203 aa14.84□□□□□ -0.03
CLN3-259ENST00000637551 LRRC75BQ2VPJ9 315 aa14.84□□□□□ -0.03
CLN3-259ENST00000637551 OR56B1Q8NGI3 324 aa14.84□□□□□ -0.03
CLN3-259ENST00000637551 FAM46BQ96A09 425 aa14.84□□□□□ -0.03
CLN3-259ENST00000637551 LPAR5Q9H1C0 372 aa14.84□□□□□ -0.03
CLN3-259ENST00000637551 RAB18Q9NP72 206 aa14.84□□□□□ -0.03
CLN3-259ENST00000637551 RAB22AQ9UL26 194 aa14.84□□□□□ -0.03
CLN3-259ENST00000637551 AMMECR1Q9Y4X0 333 aaPredicted RBP14.84□□□□□ -0.03
CLN3-259ENST00000637551 TRBV6-6A0A0A6YYG2 114 aa14.83□□□□□ -0.04
CLN3-259ENST00000637551 F2RL2O00254 374 aa14.83□□□□□ -0.04
CLN3-259ENST00000637551 ARG1P05089 322 aa14.83□□□□□ -0.04
CLN3-259ENST00000637551 HTR1DP28221 377 aa14.83□□□□□ -0.04
CLN3-259ENST00000637551 PRRX1P54821 245 aa14.83□□□□□ -0.04
CLN3-259ENST00000637551 FOXL1Q12952 345 aa14.83□□□□□ -0.04
CLN3-259ENST00000637551 P2RY14Q15391 338 aa14.83□□□□□ -0.04
CLN3-259ENST00000637551 STEAP3Q658P3 488 aa14.83□□□□□ -0.04
CLN3-259ENST00000637551 CROCCP3Q8IVE0 287 aa14.83□□□□□ -0.04
CLN3-259ENST00000637551 PDZD9Q8IXQ8 264 aa14.83□□□□□ -0.04
CLN3-259ENST00000637551 ABHD12Q8N2K0 398 aa14.83□□□□□ -0.04
CLN3-259ENST00000637551 OR9G1Q8NH87 305 aa14.83□□□□□ -0.04
CLN3-259ENST00000637551 IDI2-AS1Q9NZ38 188 aa14.83□□□□□ -0.04
CLN3-259ENST00000637551 MDFIC2A0A1B0GVS7 189 aa14.82□□□□□ -0.04
CLN3-259ENST00000637551 SHISA3A0PJX4 238 aa14.82□□□□□ -0.04
CLN3-259ENST00000637551 FOXI3A8MTJ6 420 aaPredicted RBP14.82□□□□□ -0.04
CLN3-259ENST00000637551 C15orf65H3BRN8 121 aa14.82□□□□□ -0.04
CLN3-259ENST00000637551 SPINT2O43291 252 aa14.82□□□□□ -0.04
CLN3-259ENST00000637551 NDUFA7O95182 113 aa14.82□□□□□ -0.04
CLN3-259ENST00000637551 COX7A1P24310 79 aa14.82□□□□□ -0.04
CLN3-259ENST00000637551 ACTG1P63261 375 aa14.82□□□□□ -0.04
CLN3-259ENST00000637551 LY6G6FQ5SQ64 297 aa14.82□□□□□ -0.04
CLN3-259ENST00000637551 PRAMEF5Q5TYX0 476 aa14.82□□□□□ -0.04
CLN3-259ENST00000637551 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.82□□□□□ -0.04
CLN3-259ENST00000637551 OR51D1Q8NGF3 324 aa14.82□□□□□ -0.04
CLN3-259ENST00000637551 OR4P4Q8NGL7 312 aa14.82□□□□□ -0.04
CLN3-259ENST00000637551 ZNF581Q9P0T4 197 aa14.82□□□□□ -0.04
CLN3-259ENST00000637551 DPM3Q9P2X0 92 aa14.82□□□□□ -0.04
CLN3-259ENST00000637551 MMP24Q9Y5R2 645 aa14.82□□□□□ -0.04
CLN3-259ENST00000637551 METTL21EPA6NDL7 271 aa14.81□□□□□ -0.04
CLN3-259ENST00000637551 NAPSAO96009 420 aa14.81□□□□□ -0.04
CLN3-259ENST00000637551 BLVRBP30043 206 aaPredicted RBP14.81□□□□□ -0.04
CLN3-259ENST00000637551 DLX1P56177 255 aa14.81□□□□□ -0.04
CLN3-259ENST00000637551 HLA-DRB5Q30154 266 aa14.81□□□□□ -0.04
CLN3-259ENST00000637551 C2orf76Q3KRA6 126 aa14.81□□□□□ -0.04
CLN3-259ENST00000637551 CCDC144NLQ6NUI1 221 aa14.81□□□□□ -0.04
CLN3-259ENST00000637551 LINC00311Q8N616 119 aa14.81□□□□□ -0.04
CLN3-259ENST00000637551 MRGPRDQ8TDS7 321 aa14.81□□□□□ -0.04
CLN3-259ENST00000637551 CHIAQ9BZP6 476 aa14.81□□□□□ -0.04
CLN3-259ENST00000637551 LIN7BQ9HAP6 207 aa14.81□□□□□ -0.04
CLN3-259ENST00000637551 PITPNC1Q9UKF7 332 aa14.81□□□□□ -0.04
CLN3-259ENST00000637551 TRAPPC2LQ9UL33 140 aa14.81□□□□□ -0.04
CLN3-259ENST00000637551 SOX21Q9Y651 276 aaPredicted RBP14.81□□□□□ -0.04
CLN3-259ENST00000637551 LEUTXA8MZ59 168 aa14.8□□□□□ -0.04
CLN3-259ENST00000637551 MMP23AO75900 390 aa14.8□□□□□ -0.04
CLN3-259ENST00000637551 IGHV4-59P01825 116 aa14.8□□□□□ -0.04
CLN3-259ENST00000637551 OR10K2Q6IF99 312 aa14.8□□□□□ -0.04
CLN3-259ENST00000637551 GCDHQ92947 438 aaPredicted RBP14.8□□□□□ -0.04
CLN3-259ENST00000637551 YIPF6Q96EC8 236 aa14.8□□□□□ -0.04
CLN3-259ENST00000637551 CHCHD6Q9BRQ6 235 aa14.8□□□□□ -0.04
CLN3-259ENST00000637551 CENPOQ9BU64 300 aa14.8□□□□□ -0.04
CLN3-259ENST00000637551 MMP28Q9H239 520 aa14.8□□□□□ -0.04
CLN3-259ENST00000637551 OR51E2Q9H255 320 aa14.8□□□□□ -0.04
CLN3-259ENST00000637551 PLEKHJ1Q9NW61 149 aa14.8□□□□□ -0.04
CLN3-259ENST00000637551 KCNIP1Q9NZI2 227 aa14.8□□□□□ -0.04
CLN3-259ENST00000637551 TMEM272A0A1B0GTI8 110 aa14.79□□□□□ -0.04
CLN3-259ENST00000637551 TOR1AO14656 332 aa14.79□□□□□ -0.04
CLN3-259ENST00000637551 DIRAS3O95661 229 aa14.79□□□□□ -0.04
CLN3-259ENST00000637551 CRYBA1P05813 215 aa14.79□□□□□ -0.04
CLN3-259ENST00000637551 GADD45AP24522 165 aa14.79□□□□□ -0.04
CLN3-259ENST00000637551 SSTR5P35346 364 aa14.79□□□□□ -0.04
CLN3-259ENST00000637551 OR10A3P58181 314 aa14.79□□□□□ -0.04
CLN3-259ENST00000637551 HTD2P86397 168 aa14.79□□□□□ -0.04
CLN3-259ENST00000637551 DYNC1I2Q13409 638 aaKnown RBP14.79□□□□□ -0.04
CLN3-259ENST00000637551 SFXN4Q6P4A7 337 aa14.79□□□□□ -0.04
CLN3-259ENST00000637551 ZNF880Q6PDB4 577 aa14.79□□□□□ -0.04
CLN3-259ENST00000637551 MEGF8Q7Z7M0 2845 aa14.79□□□□□ -0.04
CLN3-259ENST00000637551 NR2C2APQ86WQ0 139 aa14.79□□□□□ -0.04
CLN3-259ENST00000637551 MRPL30Q8TCC3 161 aaKnown RBP14.79□□□□□ -0.04
CLN3-259ENST00000637551 ARL11Q969Q4 196 aa14.79□□□□□ -0.04
CLN3-259ENST00000637551 SSX3Q99909 188 aa14.79□□□□□ -0.04
CLN3-259ENST00000637551 RANBP3Q9H6Z4 567 aaPredicted RBP14.79□□□□□ -0.04
CLN3-259ENST00000637551 ZNF286AQ9HBT8 521 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms