RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 SNX22Q96L94 193 aa14.1□□□□□ -0.15
CLN3-252ENST00000636907 TAF9BQ9HBM6 251 aa14.1□□□□□ -0.15
CLN3-252ENST00000636907 PCDHB10Q9UN67 800 aa14.1□□□□□ -0.15
CLN3-252ENST00000636907 MAB21L2Q9Y586 359 aa14.1□□□□□ -0.15
CLN3-252ENST00000636907 TRBV6-7A0A0A0MS04 114 aa14.09□□□□□ -0.15
CLN3-252ENST00000636907 FAM172BPA6NC97 362 aa14.09□□□□□ -0.15
CLN3-252ENST00000636907 TUSC2O75896 110 aa14.09□□□□□ -0.15
CLN3-252ENST00000636907 RPS2P15880 293 aaKnown RBP14.09□□□□□ -0.15
CLN3-252ENST00000636907 GLIPR1P48060 266 aa14.09□□□□□ -0.15
CLN3-252ENST00000636907 UCP3P55916 312 aa14.09□□□□□ -0.15
CLN3-252ENST00000636907 SNRPD2P62316 118 aaKnown RBP14.09□□□□□ -0.15
CLN3-252ENST00000636907 TEX36Q5VZQ5 186 aa14.09□□□□□ -0.15
CLN3-252ENST00000636907 NOXA1Q86UR1 476 aa14.09□□□□□ -0.15
CLN3-252ENST00000636907 TPRX1Q8N7U7 411 aa14.09□□□□□ -0.15
CLN3-252ENST00000636907 ZNRF1Q8ND25 227 aa14.09□□□□□ -0.15
CLN3-252ENST00000636907 UBALD1Q8TB05 177 aa14.09□□□□□ -0.15
CLN3-252ENST00000636907 CHIAQ9BZP6 476 aa14.09□□□□□ -0.15
CLN3-252ENST00000636907 DLL4Q9NR61 685 aa14.09□□□□□ -0.15
CLN3-252ENST00000636907 PIPOXQ9P0Z9 390 aa14.09□□□□□ -0.15
CLN3-252ENST00000636907 PKDREJQ9NTG1 2253 aa14.08□□□□□ -0.16
CLN3-252ENST00000636907 OOEPA6NGQ2 149 aa14.08□□□□□ -0.16
CLN3-252ENST00000636907 SIX6O95475 246 aa14.08□□□□□ -0.16
CLN3-252ENST00000636907 SFT2D2O95562 160 aa14.08□□□□□ -0.16
CLN3-252ENST00000636907 DUS4LO95620 317 aaKnown RBP14.08□□□□□ -0.16
CLN3-252ENST00000636907 DIRAS3O95661 229 aa14.08□□□□□ -0.16
CLN3-252ENST00000636907 C1QBP02746 253 aa14.08□□□□□ -0.16
CLN3-252ENST00000636907 PAX5Q02548 391 aa14.08□□□□□ -0.16
CLN3-252ENST00000636907 LIN54Q6MZP7 749 aa14.08□□□□□ -0.16
CLN3-252ENST00000636907 CLEC18BQ6UXF7 455 aa14.08□□□□□ -0.16
CLN3-252ENST00000636907 PRR18Q8N4B5 295 aa14.08□□□□□ -0.16
CLN3-252ENST00000636907 OR10J5Q8NHC4 309 aa14.08□□□□□ -0.16
CLN3-252ENST00000636907 PPP1R35Q8TAP8 253 aa14.08□□□□□ -0.16
CLN3-252ENST00000636907 IL1F10Q8WWZ1 152 aa14.08□□□□□ -0.16
CLN3-252ENST00000636907 SDSLQ96GA7 329 aa14.08□□□□□ -0.16
CLN3-252ENST00000636907 OR1A1Q9P1Q5 309 aa14.08□□□□□ -0.16
CLN3-252ENST00000636907 TMEM178BH3BS89 294 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 K7N7A8 449 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 SLC22A5O76082 557 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 GYPAP02724 150 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 MUC1P15941 1255 aaPredicted RBP14.07□□□□□ -0.16
CLN3-252ENST00000636907 H2BFSP57053 126 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 EDDM3AQ14507 147 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 SLC9A3R2Q15599 337 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 H1FOOQ8IZA3 346 aaPredicted RBP14.07□□□□□ -0.16
CLN3-252ENST00000636907 SLC38A6Q8IZM9 456 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 CCL17Q92583 94 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 WDR89Q96FK6 387 aaPredicted RBP14.07□□□□□ -0.16
CLN3-252ENST00000636907 PHB2Q99623 299 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 RSRP1Q9BUV0 290 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 CLEC4MQ9H2X3 399 aaPredicted RBP14.07□□□□□ -0.16
CLN3-252ENST00000636907 TMEM106BQ9NUM4 274 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 KCNIP1Q9NZI2 227 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 RAI1Q7Z5J4 1906 aaPredicted RBP14.07□□□□□ -0.16
CLN3-252ENST00000636907 ARFGEF3Q5TH69 2177 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 IGKV1D-13A0A0B4J2D9 117 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 A0A1B0GW55 424 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 C12orf77C9JDV5 145 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 NPIPB11E5RHQ5 1161 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 MGST3O14880 152 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 OR2A4O95047 310 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 GIPP09681 153 aaPredicted RBP14.07□□□□□ -0.16
CLN3-252ENST00000636907 DUX4L2P0CJ85 424 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 DUX4L3P0CJ86 424 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 DUX4L4P0CJ87 422 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 DUX4L5P0CJ88 424 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 DUX4L6P0CJ89 424 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 DUX4L7P0CJ90 424 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 IGKV1-13P0DP09 117 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 SELLP14151 372 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 PIGPP57054 158 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 ABCA11PQ4W5N1 156 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 DCAF12L2Q5VW00 463 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 C11orf88Q6PI97 169 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 DUX4L9Q6RFH8 374 aaPredicted RBP14.07□□□□□ -0.16
CLN3-252ENST00000636907 ZNF843Q8N446 348 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 ZNF561Q8N587 486 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 DRAXINQ8NBI3 349 aaPredicted RBP14.07□□□□□ -0.16
CLN3-252ENST00000636907 OR13A1Q8NGR1 328 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 MRGPRDQ8TDS7 321 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 GAFA1Q96PS6 74 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 OR2A7Q96R45 310 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 CCL13Q99616 98 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 DUX4Q9UBX2 424 aa14.07□□□□□ -0.16
CLN3-252ENST00000636907 CRYM-AS1A6NIL9 109 aa14.06□□□□□ -0.16
CLN3-252ENST00000636907 GZMKP49863 264 aa14.06□□□□□ -0.16
CLN3-252ENST00000636907 PHLDA2Q53GA4 152 aa14.06□□□□□ -0.16
CLN3-252ENST00000636907 LY6G6FQ5SQ64 297 aa14.06□□□□□ -0.16
CLN3-252ENST00000636907 C6orf183Q5T699 404 aa14.06□□□□□ -0.16
CLN3-252ENST00000636907 ZNF788Q6ZQV5 615 aa14.06□□□□□ -0.16
CLN3-252ENST00000636907 KCTD9Q7L273 389 aa14.06□□□□□ -0.16
CLN3-252ENST00000636907 C1orf87Q8N0U7 546 aa14.06□□□□□ -0.16
CLN3-252ENST00000636907 OR1L1Q8NH94 360 aa14.06□□□□□ -0.16
CLN3-252ENST00000636907 SECTM1Q8WVN6 248 aa14.06□□□□□ -0.16
CLN3-252ENST00000636907 VRK1Q99986 396 aaPredicted RBP14.06□□□□□ -0.16
CLN3-252ENST00000636907 DCTN5Q9BTE1 182 aa14.06□□□□□ -0.16
CLN3-252ENST00000636907 ZNF665Q9H7R5 613 aa14.06□□□□□ -0.16
CLN3-252ENST00000636907 SLC2A9Q9NRM0 540 aa14.06□□□□□ -0.16
CLN3-252ENST00000636907 PRR13Q9NZ81 148 aa14.06□□□□□ -0.16
CLN3-252ENST00000636907 OR2W1Q9Y3N9 320 aa14.06□□□□□ -0.16
CLN3-252ENST00000636907 DSCAMO60469 2012 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms