RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 HEPN1Q6WQI6 88 aa14.76□□□□□ -0.05
CLN3-239ENST00000628023 CROCCP3Q8IVE0 287 aa14.76□□□□□ -0.05
CLN3-239ENST00000628023 OR4K15Q8NH41 348 aa14.76□□□□□ -0.05
CLN3-239ENST00000628023 LGALS14Q8TCE9 139 aa14.76□□□□□ -0.05
CLN3-239ENST00000628023 SULT4A1Q9BR01 284 aa14.76□□□□□ -0.05
CLN3-239ENST00000628023 CHMP1AQ9HD42 196 aaPredicted RBP14.76□□□□□ -0.05
CLN3-239ENST00000628023 SOX21Q9Y651 276 aaPredicted RBP14.76□□□□□ -0.05
CLN3-239ENST00000628023 A0A0U1RQK1 487 aa14.75□□□□□ -0.05
CLN3-239ENST00000628023 MDFIC2A0A1B0GVS7 189 aa14.75□□□□□ -0.05
CLN3-239ENST00000628023 GABARAPO95166 117 aa14.75□□□□□ -0.05
CLN3-239ENST00000628023 PAHP00439 452 aa14.75□□□□□ -0.05
CLN3-239ENST00000628023 IL1AP01583 271 aa14.75□□□□□ -0.05
CLN3-239ENST00000628023 MT-ND4P03905 459 aa14.75□□□□□ -0.05
CLN3-239ENST00000628023 ARG1P05089 322 aa14.75□□□□□ -0.05
CLN3-239ENST00000628023 NFYBP25208 207 aa14.75□□□□□ -0.05
CLN3-239ENST00000628023 SSTR5P35346 364 aa14.75□□□□□ -0.05
CLN3-239ENST00000628023 COMPP49747 757 aaPredicted RBP14.75□□□□□ -0.05
CLN3-239ENST00000628023 LGALS4P56470 323 aa14.75□□□□□ -0.05
CLN3-239ENST00000628023 DYNC1I2Q13409 638 aaKnown RBP14.75□□□□□ -0.05
CLN3-239ENST00000628023 LTC4SQ16873 150 aa14.75□□□□□ -0.05
CLN3-239ENST00000628023 C17orf58Q2M2W7 97 aa14.75□□□□□ -0.05
CLN3-239ENST00000628023 C6orf183Q5T699 404 aa14.75□□□□□ -0.05
CLN3-239ENST00000628023 OR52W1Q6IF63 320 aa14.75□□□□□ -0.05
CLN3-239ENST00000628023 ANKRD13BQ86YJ7 626 aa14.75□□□□□ -0.05
CLN3-239ENST00000628023 PIP4P2Q8N4L2 257 aa14.75□□□□□ -0.05
CLN3-239ENST00000628023 FAM89BQ8N5H3 189 aa14.75□□□□□ -0.05
CLN3-239ENST00000628023 PTX4Q96A99 478 aa14.75□□□□□ -0.05
CLN3-239ENST00000628023 FAAP24Q9BTP7 215 aa14.75□□□□□ -0.05
CLN3-239ENST00000628023 ATG5Q9H1Y0 275 aa14.75□□□□□ -0.05
CLN3-239ENST00000628023 TMEM133Q9H2Q1 129 aa14.75□□□□□ -0.05
CLN3-239ENST00000628023 FAM172BPA6NC97 362 aa14.74□□□□□ -0.05
CLN3-239ENST00000628023 MMP23AO75900 390 aa14.74□□□□□ -0.05
CLN3-239ENST00000628023 SAA4P35542 130 aa14.74□□□□□ -0.05
CLN3-239ENST00000628023 RPL5P46777 297 aaKnown RBP14.74□□□□□ -0.05
CLN3-239ENST00000628023 DEFB112Q30KQ8 113 aa14.74□□□□□ -0.05
CLN3-239ENST00000628023 HCP5Q6MZN7 132 aa14.74□□□□□ -0.05
CLN3-239ENST00000628023 SLC16A12Q6ZSM3 486 aa14.74□□□□□ -0.05
CLN3-239ENST00000628023 Q6ZTK2 550 aa14.74□□□□□ -0.05
CLN3-239ENST00000628023 ARL11Q969Q4 196 aa14.74□□□□□ -0.05
CLN3-239ENST00000628023 ARHGAP5-AS1Q96IT6 56 aa14.74□□□□□ -0.05
CLN3-239ENST00000628023 CLEC7AQ9BXN2 247 aa14.74□□□□□ -0.05
CLN3-239ENST00000628023 NAA50Q9GZZ1 169 aaKnown RBP14.74□□□□□ -0.05
CLN3-239ENST00000628023 RAB9BQ9NP90 201 aa14.74□□□□□ -0.05
CLN3-239ENST00000628023 IDI2-AS1Q9NZ38 188 aa14.74□□□□□ -0.05
CLN3-239ENST00000628023 A0A075B6Q4 140 aa14.73□□□□□ -0.05
CLN3-239ENST00000628023 IGHV2-26A0A0B4J1V2 119 aa14.73□□□□□ -0.05
CLN3-239ENST00000628023 TMEM89A2RUT3 159 aa14.73□□□□□ -0.05
CLN3-239ENST00000628023 NOL3O60936 208 aaKnown RBP14.73□□□□□ -0.05
CLN3-239ENST00000628023 GZMHP20718 246 aa14.73□□□□□ -0.05
CLN3-239ENST00000628023 RPS19P39019 145 aaKnown RBP14.73□□□□□ -0.05
CLN3-239ENST00000628023 MRPS15P82914 257 aaKnown RBP14.73□□□□□ -0.05
CLN3-239ENST00000628023 BAMBIQ13145 260 aa14.73□□□□□ -0.05
CLN3-239ENST00000628023 MIDNQ504T8 468 aa14.73□□□□□ -0.05
CLN3-239ENST00000628023 TRAT1Q6PIZ9 186 aa14.73□□□□□ -0.05
CLN3-239ENST00000628023 RTN4RL2Q86UN3 420 aa14.73□□□□□ -0.05
CLN3-239ENST00000628023 CLVS1Q8IUQ0 354 aaPredicted RBP14.73□□□□□ -0.05
CLN3-239ENST00000628023 PRR18Q8N4B5 295 aa14.73□□□□□ -0.05
CLN3-239ENST00000628023 RFESDQ8TAC1 157 aa14.73□□□□□ -0.05
CLN3-239ENST00000628023 SETD6Q8TBK2 473 aa14.73□□□□□ -0.05
CLN3-239ENST00000628023 MRPL30Q8TCC3 161 aaKnown RBP14.73□□□□□ -0.05
CLN3-239ENST00000628023 RAB3CQ96E17 227 aa14.73□□□□□ -0.05
CLN3-239ENST00000628023 CYYR1Q96J86 154 aa14.73□□□□□ -0.05
CLN3-239ENST00000628023 ZNF48Q96MX3 618 aaPredicted RBP14.73□□□□□ -0.05
CLN3-239ENST00000628023 PECRQ9BY49 303 aa14.73□□□□□ -0.05
CLN3-239ENST00000628023 KCNIP1Q9NZI2 227 aa14.73□□□□□ -0.05
CLN3-239ENST00000628023 AK3Q9UIJ7 227 aa14.73□□□□□ -0.05
CLN3-239ENST00000628023 HSF4Q9ULV5 492 aa14.73□□□□□ -0.05
CLN3-239ENST00000628023 ETV7Q9Y603 341 aa14.73□□□□□ -0.05
CLN3-239ENST00000628023 SPINT2O43291 252 aa14.72□□□□□ -0.05
CLN3-239ENST00000628023 TMEM127O75204 238 aa14.72□□□□□ -0.05
CLN3-239ENST00000628023 FBP1P09467 338 aa14.72□□□□□ -0.05
CLN3-239ENST00000628023 GDNFP39905 211 aa14.72□□□□□ -0.05
CLN3-239ENST00000628023 SCAND1P57086 179 aa14.72□□□□□ -0.05
CLN3-239ENST00000628023 MOGAT2Q3SYC2 334 aa14.72□□□□□ -0.05
CLN3-239ENST00000628023 BAIAP2L2Q6UXY1 529 aa14.72□□□□□ -0.05
CLN3-239ENST00000628023 ABHD12Q8N2K0 398 aa14.72□□□□□ -0.05
CLN3-239ENST00000628023 OR10R2Q8NGX6 335 aa14.72□□□□□ -0.05
CLN3-239ENST00000628023 SGMS2Q8NHU3 365 aa14.72□□□□□ -0.05
CLN3-239ENST00000628023 UBALD1Q8TB05 177 aa14.72□□□□□ -0.05
CLN3-239ENST00000628023 SLC25A46Q96AG3 418 aa14.72□□□□□ -0.05
CLN3-239ENST00000628023 PHF21AQ96BD5 680 aa14.72□□□□□ -0.05
CLN3-239ENST00000628023 KIRREL1Q96J84 757 aa14.72□□□□□ -0.05
CLN3-239ENST00000628023 TENM1Q9UKZ4 2725 aa14.72□□□□□ -0.05
CLN3-239ENST00000628023 FOXI3A8MTJ6 420 aaPredicted RBP14.71□□□□□ -0.05
CLN3-239ENST00000628023 TOR1AO14656 332 aa14.71□□□□□ -0.05
CLN3-239ENST00000628023 ORC5O43913 435 aa14.71□□□□□ -0.05
CLN3-239ENST00000628023 SCGNO76038 276 aa14.71□□□□□ -0.05
CLN3-239ENST00000628023 CGB3P0DN86 165 aa14.71□□□□□ -0.05
CLN3-239ENST00000628023 CGB7P0DN87 165 aa14.71□□□□□ -0.05
CLN3-239ENST00000628023 CTF1Q16619 201 aa14.71□□□□□ -0.05
CLN3-239ENST00000628023 GAPTQ8N292 157 aa14.71□□□□□ -0.05
CLN3-239ENST00000628023 OR11H6Q8NGC7 330 aa14.71□□□□□ -0.05
CLN3-239ENST00000628023 CMSS1Q9BQ75 279 aaKnown RBP14.71□□□□□ -0.05
CLN3-239ENST00000628023 RIMS4Q9H426 269 aaPredicted RBP14.71□□□□□ -0.05
CLN3-239ENST00000628023 C12orf4Q9NQ89 552 aa14.71□□□□□ -0.05
CLN3-239ENST00000628023 RHBDL2Q9NX52 303 aa14.71□□□□□ -0.05
CLN3-239ENST00000628023 ABRACLQ9P1F3 81 aa14.71□□□□□ -0.05
CLN3-239ENST00000628023 C12orf77C9JDV5 145 aa14.7□□□□□ -0.06
CLN3-239ENST00000628023 NPIPB11E5RHQ5 1161 aa14.7□□□□□ -0.06
CLN3-239ENST00000628023 SDCBPO00560 298 aaPredicted RBP14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms