RNA–Protein interactions for RNA: ENST00000616053.4

TCF4-248, Transcript of transcription factor 4, humanhuman

TSL 5 BASIC

Gene TCF4, Length 8,140 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-248ENST00000616053 OR13A1Q8NGR1 328 aa11.15□□□□□ -0.62
TCF4-248ENST00000616053 COL2A1P02458 1487 aaPredicted RBP11.15□□□□□ -0.62
TCF4-248ENST00000616053 PLPP1O14494 284 aa11.15□□□□□ -0.62
TCF4-248ENST00000616053 CKS2P33552 79 aa11.15□□□□□ -0.62
TCF4-248ENST00000616053 SELENOHQ8IZQ5 122 aaKnown RBP11.15□□□□□ -0.62
TCF4-248ENST00000616053 C11orf44Q8N8P7 122 aa11.15□□□□□ -0.62
TCF4-248ENST00000616053 CST9LQ9H4G1 147 aa11.15□□□□□ -0.62
TCF4-248ENST00000616053 K7N7A8 449 aa11.15□□□□□ -0.62
TCF4-248ENST00000616053 RHBDD2Q6NTF9 364 aa11.15□□□□□ -0.62
TCF4-248ENST00000616053 VRK3Q8IV63 474 aa11.15□□□□□ -0.62
TCF4-248ENST00000616053 SLC7A5P1Q8MH63 180 aa11.15□□□□□ -0.62
TCF4-248ENST00000616053 HYAL3O43820 417 aaPredicted RBP11.15□□□□□ -0.62
TCF4-248ENST00000616053 FAM157CP0CG43 387 aa11.15□□□□□ -0.62
TCF4-248ENST00000616053 RASL12Q9NYN1 266 aa11.15□□□□□ -0.62
TCF4-248ENST00000616053 FER1L5A0AVI2 2057 aa11.15□□□□□ -0.62
TCF4-248ENST00000616053 MAP1LC3B2A6NCE7 125 aa11.15□□□□□ -0.62
TCF4-248ENST00000616053 ARF6P62330 175 aa11.15□□□□□ -0.62
TCF4-248ENST00000616053 SNAI3Q3KNW1 292 aa11.15□□□□□ -0.62
TCF4-248ENST00000616053 MAP1LC3BQ9GZQ8 125 aa11.15□□□□□ -0.62
TCF4-248ENST00000616053 CDIPTO14735 213 aa11.15□□□□□ -0.63
TCF4-248ENST00000616053 HYPMO75409 117 aa11.15□□□□□ -0.63
TCF4-248ENST00000616053 EMDP50402 254 aa11.15□□□□□ -0.63
TCF4-248ENST00000616053 MBD3L1Q8WWY6 194 aa11.15□□□□□ -0.63
TCF4-248ENST00000616053 HIST1H4GQ99525 98 aa11.15□□□□□ -0.63
TCF4-248ENST00000616053 NPPCP23582 126 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 COMPP49747 757 aaPredicted RBP11.14□□□□□ -0.63
TCF4-248ENST00000616053 CLLU1Q5K131 121 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 BCDIN3DQ7Z5W3 292 aaKnown RBP11.14□□□□□ -0.63
TCF4-248ENST00000616053 LILRA3Q8N6C8 439 aaPredicted RBP11.14□□□□□ -0.63
TCF4-248ENST00000616053 ABHD14BQ96IU4 210 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 VN1R1Q9GZP7 353 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 ABCC6O95255 1503 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 TRGV3P03979 118 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 NKAIN4Q8IVV8 208 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 C17orf51A8MQB3 221 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 DIRC3C9JPN6 131 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 STAG3L3P0CL85 134 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 FCGR2BP31994 310 aaPredicted RBP11.14□□□□□ -0.63
TCF4-248ENST00000616053 MVDP53602 400 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 ZFC3H1O60293 1989 aaKnown RBP11.14□□□□□ -0.63
TCF4-248ENST00000616053 A0A1W2PR48 441 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 H3BRM9 83 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 IL36RNQ9UBH0 155 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 MRC1P22897 1456 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 TRGV4A0A0C4DH28 118 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 SCNM1Q9BWG6 230 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 KIAA1210Q9ULL0 1709 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 LINC00862A6NCI5 91 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 RPL27AP46776 148 aaKnown RBP11.14□□□□□ -0.63
TCF4-248ENST00000616053 FAM89BQ8N5H3 189 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 OR52I2Q8NH67 350 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 LINC00470Q9BZP3 86 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 ACER3Q9NUN7 267 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 CD96P40200 585 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 CLDN20P56880 219 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 DNLZQ5SXM8 178 aa11.14□□□□□ -0.63
TCF4-248ENST00000616053 A8MWL6 223 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 ANOS1P23352 680 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 RAG2P55895 527 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 CD81P60033 236 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 ZNF117Q03924 483 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 ST3GAL2Q16842 350 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 WNT5BQ9H1J7 359 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 OR51B2Q9Y5P1 312 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 USP32Q8NFA0 1604 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 C3orf85A0A1B0GTC6 90 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 OR2W5A6NFC9 320 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 PMS2P11Q13670 270 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 PRICKLE4Q2TBC4 344 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 ZNF770Q6IQ21 691 aaPredicted RBP11.13□□□□□ -0.63
TCF4-248ENST00000616053 PRSS54Q6PEW0 395 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 DHRS4L2Q6PKH6 230 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 ZXDCQ2QGD7 858 aaPredicted RBP11.13□□□□□ -0.63
TCF4-248ENST00000616053 TMEM252Q8N6L7 170 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 OR10AC1Q8NH08 325 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 MMP25Q9NPA2 562 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 TMEM196Q5HYL7 178 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 SLC23A3Q6PIS1 610 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 MAP6Q96JE9 813 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 ZNF629Q9UEG4 869 aaPredicted RBP11.13□□□□□ -0.63
TCF4-248ENST00000616053 ZNF253O75346 499 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 MRPL58Q14197 206 aaKnown RBP11.13□□□□□ -0.63
TCF4-248ENST00000616053 ROBO1Q9Y6N7 1651 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 CACNA1SQ13698 1873 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 J3QR06 171 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 PATE4P0C8F1 98 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 FGF8P55075 233 aaPredicted RBP11.13□□□□□ -0.63
TCF4-248ENST00000616053 MRPL54Q6P161 138 aaKnown RBP11.13□□□□□ -0.63
TCF4-248ENST00000616053 PDLIM5Q96HC4 596 aaKnown RBP11.13□□□□□ -0.63
TCF4-248ENST00000616053 SOSTQ9BQB4 213 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 JKAMPQ9P055 326 aa11.13□□□□□ -0.63
TCF4-248ENST00000616053 AFDNP55196 1824 aaKnown RBP11.13□□□□□ -0.63
TCF4-248ENST00000616053 SAA1P0DJI8 122 aaPredicted RBP11.12□□□□□ -0.63
TCF4-248ENST00000616053 GPR27Q9NS67 375 aa11.12□□□□□ -0.63
TCF4-248ENST00000616053 WBP1LQ9NX94 342 aa11.12□□□□□ -0.63
TCF4-248ENST00000616053 MBD5Q9P267 1494 aa11.12□□□□□ -0.63
TCF4-248ENST00000616053 AP4M1O00189 453 aa11.12□□□□□ -0.63
TCF4-248ENST00000616053 OR5C1Q8NGR4 320 aa11.12□□□□□ -0.63
TCF4-248ENST00000616053 A0A1W2PPE3 182 aa11.12□□□□□ -0.63
TCF4-248ENST00000616053 DUXBA0A1W2PPF3 345 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms