RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 A0A1W2PRV1 198 aa11.53□□□□□ -0.56
SHKBP1-217ENST00000598558 ZNF729A6NN14 1252 aaPredicted RBP11.53□□□□□ -0.56
SHKBP1-217ENST00000598558 AIREO43918 545 aa11.53□□□□□ -0.56
SHKBP1-217ENST00000598558 PAHP00439 452 aa11.53□□□□□ -0.56
SHKBP1-217ENST00000598558 IGHV3-7P01780 117 aa11.53□□□□□ -0.56
SHKBP1-217ENST00000598558 GLAP06280 429 aa11.53□□□□□ -0.56
SHKBP1-217ENST00000598558 SNRPBP14678 240 aaKnown RBP11.53□□□□□ -0.56
SHKBP1-217ENST00000598558 RCC1P18754 421 aaPredicted RBP11.53□□□□□ -0.56
SHKBP1-217ENST00000598558 ALDH3B2P48448 385 aa11.53□□□□□ -0.56
SHKBP1-217ENST00000598558 VEGFCP49767 419 aa11.53□□□□□ -0.56
SHKBP1-217ENST00000598558 PLAC9Q5JTB6 97 aa11.53□□□□□ -0.56
SHKBP1-217ENST00000598558 OLFML2AQ68BL7 652 aa11.53□□□□□ -0.56
SHKBP1-217ENST00000598558 ZNF626Q68DY1 528 aa11.53□□□□□ -0.56
SHKBP1-217ENST00000598558 GDPGP1Q6ZNW5 385 aa11.53□□□□□ -0.56
SHKBP1-217ENST00000598558 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.53□□□□□ -0.56
SHKBP1-217ENST00000598558 MRPL30Q8TCC3 161 aaKnown RBP11.53□□□□□ -0.56
SHKBP1-217ENST00000598558 LEAP2Q969E1 77 aa11.53□□□□□ -0.56
SHKBP1-217ENST00000598558 KIRREL1Q96J84 757 aa11.53□□□□□ -0.56
SHKBP1-217ENST00000598558 LIN7BQ9HAP6 207 aa11.53□□□□□ -0.56
SHKBP1-217ENST00000598558 ZNF286AQ9HBT8 521 aa11.53□□□□□ -0.56
SHKBP1-217ENST00000598558 VCX3AQ9NNX9 186 aa11.53□□□□□ -0.56
SHKBP1-217ENST00000598558 TNFRSF19Q9NS68 423 aa11.53□□□□□ -0.56
SHKBP1-217ENST00000598558 DAPK2Q9UIK4 370 aa11.53□□□□□ -0.56
SHKBP1-217ENST00000598558 IL1AP01583 271 aa11.52□□□□□ -0.57
SHKBP1-217ENST00000598558 IGHV4-59P01825 116 aa11.52□□□□□ -0.57
SHKBP1-217ENST00000598558 RPS19P39019 145 aaKnown RBP11.52□□□□□ -0.57
SHKBP1-217ENST00000598558 RBM39Q14498 530 aaKnown RBP11.52□□□□□ -0.57
SHKBP1-217ENST00000598558 LTC4SQ16873 150 aa11.52□□□□□ -0.57
SHKBP1-217ENST00000598558 MIDNQ504T8 468 aa11.52□□□□□ -0.57
SHKBP1-217ENST00000598558 SFXN4Q6P4A7 337 aa11.52□□□□□ -0.57
SHKBP1-217ENST00000598558 SLC16A12Q6ZSM3 486 aa11.52□□□□□ -0.57
SHKBP1-217ENST00000598558 ABHD12Q8N2K0 398 aa11.52□□□□□ -0.57
SHKBP1-217ENST00000598558 ZNF565Q8N9K5 539 aa11.52□□□□□ -0.57
SHKBP1-217ENST00000598558 OR13D1Q8NGV5 346 aa11.52□□□□□ -0.57
SHKBP1-217ENST00000598558 OR5H6Q8NGV6 325 aa11.52□□□□□ -0.57
SHKBP1-217ENST00000598558 ZDHHC16Q969W1 377 aa11.52□□□□□ -0.57
SHKBP1-217ENST00000598558 ARHGAP5-AS1Q96IT6 56 aa11.52□□□□□ -0.57
SHKBP1-217ENST00000598558 NEDD4LQ96PU5 975 aa11.52□□□□□ -0.57
SHKBP1-217ENST00000598558 HDHD3Q9BSH5 251 aaPredicted RBP11.52□□□□□ -0.57
SHKBP1-217ENST00000598558 PECRQ9BY49 303 aa11.52□□□□□ -0.57
SHKBP1-217ENST00000598558 GAL3ST2Q9H3Q3 398 aa11.52□□□□□ -0.57
SHKBP1-217ENST00000598558 IDI2-AS1Q9NZ38 188 aa11.52□□□□□ -0.57
SHKBP1-217ENST00000598558 RAB22AQ9UL26 194 aa11.52□□□□□ -0.57
SHKBP1-217ENST00000598558 KCNK7Q9Y2U2 307 aa11.52□□□□□ -0.57
SHKBP1-217ENST00000598558 RNF212BA8MTL3 300 aa11.51□□□□□ -0.57
SHKBP1-217ENST00000598558 C12orf77C9JDV5 145 aa11.51□□□□□ -0.57
SHKBP1-217ENST00000598558 RAB27BO00194 218 aa11.51□□□□□ -0.57
SHKBP1-217ENST00000598558 ARG1P05089 322 aa11.51□□□□□ -0.57
SHKBP1-217ENST00000598558 CD34P28906 385 aa11.51□□□□□ -0.57
SHKBP1-217ENST00000598558 IER3P46695 156 aa11.51□□□□□ -0.57
SHKBP1-217ENST00000598558 NCS1P62166 190 aa11.51□□□□□ -0.57
SHKBP1-217ENST00000598558 DYNC1I2Q13409 638 aaKnown RBP11.51□□□□□ -0.57
SHKBP1-217ENST00000598558 RBMS3Q6XE24 437 aaKnown RBP11.51□□□□□ -0.57
SHKBP1-217ENST00000598558 LDLRAD3Q86YD5 345 aa11.51□□□□□ -0.57
SHKBP1-217ENST00000598558 OR4P4Q8NGL7 312 aa11.51□□□□□ -0.57
SHKBP1-217ENST00000598558 OR1L1Q8NH94 360 aa11.51□□□□□ -0.57
SHKBP1-217ENST00000598558 PIFOQ8TCI5 191 aa11.51□□□□□ -0.57
SHKBP1-217ENST00000598558 ARL11Q969Q4 196 aa11.51□□□□□ -0.57
SHKBP1-217ENST00000598558 URM1Q9BTM9 101 aaKnown RBP11.51□□□□□ -0.57
SHKBP1-217ENST00000598558 MRPS26Q9BYN8 205 aaKnown RBP11.51□□□□□ -0.57
SHKBP1-217ENST00000598558 MEGF9Q9H1U4 602 aa11.51□□□□□ -0.57
SHKBP1-217ENST00000598558 AK3Q9UIJ7 227 aa11.51□□□□□ -0.57
SHKBP1-217ENST00000598558 FAM96BQ9Y3D0 163 aa11.51□□□□□ -0.57
SHKBP1-217ENST00000598558 A0A087X0M5 115 aa11.5□□□□□ -0.57
SHKBP1-217ENST00000598558 A0A1B0GX30 115 aa11.5□□□□□ -0.57
SHKBP1-217ENST00000598558 NAPSAO96009 420 aa11.5□□□□□ -0.57
SHKBP1-217ENST00000598558 IGLV1-47P01700 117 aa11.5□□□□□ -0.57
SHKBP1-217ENST00000598558 GZMHP20718 246 aa11.5□□□□□ -0.57
SHKBP1-217ENST00000598558 NFYBP25208 207 aa11.5□□□□□ -0.57
SHKBP1-217ENST00000598558 LOXL3P58215 753 aa11.5□□□□□ -0.57
SHKBP1-217ENST00000598558 VBP1P61758 197 aa11.5□□□□□ -0.57
SHKBP1-217ENST00000598558 BEND2Q8NDZ0 799 aa11.5□□□□□ -0.57
SHKBP1-217ENST00000598558 C19orf24Q9BVV8 132 aa11.5□□□□□ -0.57
SHKBP1-217ENST00000598558 CLEC7AQ9BXN2 247 aa11.5□□□□□ -0.57
SHKBP1-217ENST00000598558 CHIAQ9BZP6 476 aa11.5□□□□□ -0.57
SHKBP1-217ENST00000598558 MBNL3Q9NUK0 354 aaKnown RBP11.5□□□□□ -0.57
SHKBP1-217ENST00000598558 PLEKHJ1Q9NW61 149 aa11.5□□□□□ -0.57
SHKBP1-217ENST00000598558 ELF5Q9UKW6 265 aaPredicted RBP11.5□□□□□ -0.57
SHKBP1-217ENST00000598558 TRAPPC2LQ9UL33 140 aa11.5□□□□□ -0.57
SHKBP1-217ENST00000598558 HSF4Q9ULV5 492 aa11.5□□□□□ -0.57
SHKBP1-217ENST00000598558 DSCAML1Q8TD84 2053 aa11.49□□□□□ -0.57
SHKBP1-217ENST00000598558 IGHV3-43A0A0B4J1X8 118 aa11.49□□□□□ -0.57
SHKBP1-217ENST00000598558 A0A1W2PPE3 182 aa11.49□□□□□ -0.57
SHKBP1-217ENST00000598558 CLDN34H7C241 214 aa11.49□□□□□ -0.57
SHKBP1-217ENST00000598558 ORC5O43913 435 aa11.49□□□□□ -0.57
SHKBP1-217ENST00000598558 CA11O75493 328 aa11.49□□□□□ -0.57
SHKBP1-217ENST00000598558 HBZP02008 142 aa11.49□□□□□ -0.57
SHKBP1-217ENST00000598558 FBP1P09467 338 aa11.49□□□□□ -0.57
SHKBP1-217ENST00000598558 IGHV3-43DP0DP04 118 aa11.49□□□□□ -0.57
SHKBP1-217ENST00000598558 RAB6AP20340 208 aa11.49□□□□□ -0.57
SHKBP1-217ENST00000598558 RAB13P51153 203 aa11.49□□□□□ -0.57
SHKBP1-217ENST00000598558 CTF1Q16619 201 aa11.49□□□□□ -0.57
SHKBP1-217ENST00000598558 TIMM50Q3ZCQ8 353 aa11.49□□□□□ -0.57
SHKBP1-217ENST00000598558 IDNKQ5T6J7 187 aa11.49□□□□□ -0.57
SHKBP1-217ENST00000598558 GPR107Q5VW38 600 aa11.49□□□□□ -0.57
SHKBP1-217ENST00000598558 OR52W1Q6IF63 320 aa11.49□□□□□ -0.57
SHKBP1-217ENST00000598558 ZNF880Q6PDB4 577 aa11.49□□□□□ -0.57
SHKBP1-217ENST00000598558 Q6ZTK2 550 aa11.49□□□□□ -0.57
SHKBP1-217ENST00000598558 ANKRD13BQ86YJ7 626 aa11.49□□□□□ -0.57
SHKBP1-217ENST00000598558 LGALS14Q8TCE9 139 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms