RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 FAHD1Q6P587 224 aa1.77□□□□□ -2.13
SS18-214ENST00000580003 SPICQ8N5J4 248 aa1.77□□□□□ -2.13
SS18-214ENST00000580003 OR13C9Q8NGT0 318 aa1.77□□□□□ -2.13
SS18-214ENST00000580003 ZMYND19Q96E35 227 aaPredicted RBP1.77□□□□□ -2.13
SS18-214ENST00000580003 OR52B2Q96RD2 323 aa1.77□□□□□ -2.13
SS18-214ENST00000580003 CRLF2Q9HC73 371 aa1.77□□□□□ -2.13
SS18-214ENST00000580003 CRYGDP07320 174 aa1.76□□□□□ -2.13
SS18-214ENST00000580003 BAXQ07812 192 aa1.76□□□□□ -2.13
SS18-214ENST00000580003 HBMQ6B0K9 141 aa1.76□□□□□ -2.13
SS18-214ENST00000580003 ERMNQ8TAM6 284 aa1.76□□□□□ -2.13
SS18-214ENST00000580003 WASHC3Q9Y3C0 194 aa1.76□□□□□ -2.13
SS18-214ENST00000580003 TBL2Q9Y4P3 447 aaKnown RBP1.76□□□□□ -2.13
SS18-214ENST00000580003 ATG2BQ96BY7 2078 aa1.75□□□□□ -2.13
SS18-214ENST00000580003 FAM183AA6NL82 134 aa1.75□□□□□ -2.13
SS18-214ENST00000580003 UBDO15205 165 aa1.75□□□□□ -2.13
SS18-214ENST00000580003 OR4A8P0C604 315 aa1.75□□□□□ -2.13
SS18-214ENST00000580003 BGNP21810 368 aa1.75□□□□□ -2.13
SS18-214ENST00000580003 SPAM1P38567 509 aa1.75□□□□□ -2.13
SS18-214ENST00000580003 DNASE1L1P49184 302 aa1.75□□□□□ -2.13
SS18-214ENST00000580003 INPP1P49441 399 aa1.75□□□□□ -2.13
SS18-214ENST00000580003 PRDX1Q06830 199 aaKnown RBP1.75□□□□□ -2.13
SS18-214ENST00000580003 C6orf183Q5T699 404 aa1.75□□□□□ -2.13
SS18-214ENST00000580003 SDIM1Q6ZPB5 146 aa1.75□□□□□ -2.13
SS18-214ENST00000580003 DGAT2L6Q6ZPD8 337 aa1.75□□□□□ -2.13
SS18-214ENST00000580003 CCDC121Q6ZUS5 278 aa1.75□□□□□ -2.13
SS18-214ENST00000580003 PID1Q7Z2X4 250 aa1.75□□□□□ -2.13
SS18-214ENST00000580003 SYS1Q8N2H4 156 aa1.75□□□□□ -2.13
SS18-214ENST00000580003 POTEKPQ9BYX7 375 aa1.75□□□□□ -2.13
SS18-214ENST00000580003 MINOS1-NBL1R4GNA1 71 aa1.75□□□□□ -2.13
SS18-214ENST00000580003 YLPM1P49750 1951 aaKnown RBP1.75□□□□□ -2.13
SS18-214ENST00000580003 COL18A1P39060 1754 aa1.75□□□□□ -2.13
SS18-214ENST00000580003 CRB1P82279 1406 aa1.74□□□□□ -2.13
SS18-214ENST00000580003 MUC21A0A0G2JKD1 596 aa1.74□□□□□ -2.13
SS18-214ENST00000580003 MUC21A0A140T8X8 626 aa1.74□□□□□ -2.13
SS18-214ENST00000580003 GSTTP1A0A1W2PQM5 241 aa1.74□□□□□ -2.13
SS18-214ENST00000580003 SC5DO75845 299 aa1.74□□□□□ -2.13
SS18-214ENST00000580003 NQO1P15559 274 aaKnown RBP1.74□□□□□ -2.13
SS18-214ENST00000580003 SPNP16150 400 aa1.74□□□□□ -2.13
SS18-214ENST00000580003 OR2B6P58173 313 aa1.74□□□□□ -2.13
SS18-214ENST00000580003 ZNF117Q03924 483 aa1.74□□□□□ -2.13
SS18-214ENST00000580003 LAMTOR1Q6IAA8 161 aa1.74□□□□□ -2.13
SS18-214ENST00000580003 PDCL2Q8N4E4 241 aa1.74□□□□□ -2.13
SS18-214ENST00000580003 CR1P17927 2039 aa1.74□□□□□ -2.13
SS18-214ENST00000580003 CACNA1SQ13698 1873 aa1.73□□□□□ -2.13
SS18-214ENST00000580003 TRAV8-2A0A0B4J237 113 aa1.73□□□□□ -2.13
SS18-214ENST00000580003 LTAP01374 205 aa1.73□□□□□ -2.13
SS18-214ENST00000580003 TSPOP30536 169 aa1.73□□□□□ -2.13
SS18-214ENST00000580003 GABRA3P34903 492 aa1.73□□□□□ -2.13
SS18-214ENST00000580003 MP68P56378 58 aa1.73□□□□□ -2.13
SS18-214ENST00000580003 RWDD2BP57060 319 aa1.73□□□□□ -2.13
SS18-214ENST00000580003 RAB2AP61019 212 aa1.73□□□□□ -2.13
SS18-214ENST00000580003 NKAIN1Q4KMZ8 207 aa1.73□□□□□ -2.13
SS18-214ENST00000580003 FAM19A3Q7Z5A8 133 aa1.73□□□□□ -2.13
SS18-214ENST00000580003 ZNF321PQ8N8H1 164 aa1.73□□□□□ -2.13
SS18-214ENST00000580003 OR4X1Q8NH49 305 aa1.73□□□□□ -2.13
SS18-214ENST00000580003 EBPLQ9BY08 206 aa1.73□□□□□ -2.13
SS18-214ENST00000580003 RABL2AQ9UBK7 228 aaPredicted RBP1.73□□□□□ -2.13
SS18-214ENST00000580003 HELZ2Q9BYK8 2649 aaKnown RBP1.73□□□□□ -2.13
SS18-214ENST00000580003 COL4A1P02462 1669 aa1.73□□□□□ -2.13
SS18-214ENST00000580003 KIF27Q86VH2 1401 aa1.73□□□□□ -2.13
SS18-214ENST00000580003 FGF16O43320 207 aa1.72□□□□□ -2.13
SS18-214ENST00000580003 VAPBO95292 243 aa1.72□□□□□ -2.13
SS18-214ENST00000580003 ANGP03950 147 aaKnown RBP1.72□□□□□ -2.13
SS18-214ENST00000580003 GPX1P07203 203 aa1.72□□□□□ -2.13
SS18-214ENST00000580003 CRYGCP07315 174 aa1.72□□□□□ -2.13
SS18-214ENST00000580003 RPA3P35244 121 aaPredicted RBP1.72□□□□□ -2.13
SS18-214ENST00000580003 TRIP13Q15645 432 aaPredicted RBP1.72□□□□□ -2.13
SS18-214ENST00000580003 SELENOHQ8IZQ5 122 aaKnown RBP1.72□□□□□ -2.13
SS18-214ENST00000580003 ASCC1Q8N9N2 400 aaKnown RBP1.72□□□□□ -2.13
SS18-214ENST00000580003 DTD1Q8TEA8 209 aa1.72□□□□□ -2.13
SS18-214ENST00000580003 CACNG8Q8WXS5 425 aa1.72□□□□□ -2.13
SS18-214ENST00000580003 TMBIM1Q969X1 311 aa1.72□□□□□ -2.13
SS18-214ENST00000580003 TXNL4BQ9NX01 149 aaKnown RBP1.72□□□□□ -2.13
SS18-214ENST00000580003 STMN3Q9NZ72 180 aa1.72□□□□□ -2.13
SS18-214ENST00000580003 PXDNLA1KZ92 1463 aa1.71□□□□□ -2.14
SS18-214ENST00000580003 IGKV1-12A0A0C4DH73 117 aa1.71□□□□□ -2.14
SS18-214ENST00000580003 RNASEK-C17orf49H0YIS7 233 aa1.71□□□□□ -2.14
SS18-214ENST00000580003 IGKV1D-12P01611 117 aa1.71□□□□□ -2.14
SS18-214ENST00000580003 LPAR6P43657 344 aa1.71□□□□□ -2.14
SS18-214ENST00000580003 ATP5J2P56134 94 aa1.71□□□□□ -2.14
SS18-214ENST00000580003 FAM229BQ4G0N7 80 aa1.71□□□□□ -2.14
SS18-214ENST00000580003 CAVIN4Q5BKX8 364 aa1.71□□□□□ -2.14
SS18-214ENST00000580003 VN1R4Q7Z5H5 301 aa1.71□□□□□ -2.14
SS18-214ENST00000580003 ZFAND2AQ8N6M9 145 aa1.71□□□□□ -2.14
SS18-214ENST00000580003 OR2AE1Q8NHA4 323 aa1.71□□□□□ -2.14
SS18-214ENST00000580003 ZNF563Q8TA94 476 aa1.71□□□□□ -2.14
SS18-214ENST00000580003 LGALS14Q8TCE9 139 aa1.71□□□□□ -2.14
SS18-214ENST00000580003 VPS37CA5D8V6 355 aaPredicted RBP1.7□□□□□ -2.14
SS18-214ENST00000580003 K7EQS6 105 aa1.7□□□□□ -2.14
SS18-214ENST00000580003 AKR1C2P52895 323 aa1.7□□□□□ -2.14
SS18-214ENST00000580003 TRAM1Q15629 374 aa1.7□□□□□ -2.14
SS18-214ENST00000580003 FAM183BPQ6ZVS7 135 aa1.7□□□□□ -2.14
SS18-214ENST00000580003 MBOAT7Q96N66 472 aa1.7□□□□□ -2.14
SS18-214ENST00000580003 TAPBPLQ9BX59 468 aa1.7□□□□□ -2.14
SS18-214ENST00000580003 RMND1Q9NWS8 449 aa1.7□□□□□ -2.14
SS18-214ENST00000580003 CHTOPQ9Y3Y2 248 aaKnown RBP1.7□□□□□ -2.14
SS18-214ENST00000580003 MTCH2Q9Y6C9 303 aa1.7□□□□□ -2.14
SS18-214ENST00000580003 TRPM6Q9BX84 2022 aa1.69□□□□□ -2.14
SS18-214ENST00000580003 USP42Q9H9J4 1324 aaKnown RBP1.69□□□□□ -2.14
SS18-214ENST00000580003 A0A0G2JQZ4 141 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms