RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 FAM90A20PA6NIJ5 464 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 FAM90A7PA6NKC0 464 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 FAM90A22PA8MWA6 464 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 FAM90A12PA8MX19 464 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 FAM90A5PA8MXJ8 464 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 FAM90A23PA8MXZ1 464 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 AIPO00170 330 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 UCHL1P09936 223 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 FAM90A15PP0C7V4 464 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 FAM90A13PP0C7W8 464 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 FAM90A14PP0C7W9 464 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 FAM90A24PP0C7X0 464 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 SRMP19623 302 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 VHLP40337 213 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 MAP2K4P45985 399 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 MLLT11Q13015 90 aaPredicted RBP19.2■□□□□ 0.66
SHMT1-206ENST00000579558 RAB12Q6IQ22 244 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 TREML4Q6UXN2 200 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 ZNF497Q6ZNH5 498 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 FAM46BQ96A09 425 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 Q96M66 194 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 CST11Q9H112 138 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 ZNF702PQ9H963 129 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 AMMECR1Q9Y4X0 333 aaPredicted RBP19.2■□□□□ 0.66
SHMT1-206ENST00000579558 PEX16Q9Y5Y5 336 aa19.2■□□□□ 0.66
SHMT1-206ENST00000579558 LY6LH3BQJ8 138 aa19.19■□□□□ 0.66
SHMT1-206ENST00000579558 H3BUI4 141 aa19.19■□□□□ 0.66
SHMT1-206ENST00000579558 J3QR06 171 aa19.19■□□□□ 0.66
SHMT1-206ENST00000579558 M0QZ24 198 aa19.19■□□□□ 0.66
SHMT1-206ENST00000579558 MT-ND4P03905 459 aa19.19■□□□□ 0.66
SHMT1-206ENST00000579558 UBBP0CG47 229 aa19.19■□□□□ 0.66
SHMT1-206ENST00000579558 GNG10P50151 68 aa19.19■□□□□ 0.66
SHMT1-206ENST00000579558 RPS25P62851 125 aaKnown RBP19.19■□□□□ 0.66
SHMT1-206ENST00000579558 TRAM1Q15629 374 aa19.19■□□□□ 0.66
SHMT1-206ENST00000579558 ARL11Q969Q4 196 aa19.19■□□□□ 0.66
SHMT1-206ENST00000579558 ETAA1Q9NY74 926 aa19.19■□□□□ 0.66
SHMT1-206ENST00000579558 PSG11Q9UQ72 335 aa19.19■□□□□ 0.66
SHMT1-206ENST00000579558 MPIG6BO95866 241 aa19.18■□□□□ 0.66
SHMT1-206ENST00000579558 CPEP16870 476 aa19.18■□□□□ 0.66
SHMT1-206ENST00000579558 CD24P25063 80 aa19.18■□□□□ 0.66
SHMT1-206ENST00000579558 C1orf100Q5SVJ3 147 aa19.18■□□□□ 0.66
SHMT1-206ENST00000579558 CCDC144NLQ6NUI1 221 aa19.18■□□□□ 0.66
SHMT1-206ENST00000579558 SLC16A12Q6ZSM3 486 aa19.18■□□□□ 0.66
SHMT1-206ENST00000579558 RPEQ96AT9 228 aa19.18■□□□□ 0.66
SHMT1-206ENST00000579558 MGLLQ99685 303 aa19.18■□□□□ 0.66
SHMT1-206ENST00000579558 PRSS22Q9GZN4 317 aa19.18■□□□□ 0.66
SHMT1-206ENST00000579558 MGAM2Q2M2H8 2515 aa19.18■□□□□ 0.66
SHMT1-206ENST00000579558 TRRAPQ9Y4A5 3859 aa19.17■□□□□ 0.66
SHMT1-206ENST00000579558 OOSP1A8MZH6 123 aa19.17■□□□□ 0.66
SHMT1-206ENST00000579558 C15orf65H3BRN8 121 aa19.17■□□□□ 0.66
SHMT1-206ENST00000579558 FUT3P21217 361 aa19.17■□□□□ 0.66
SHMT1-206ENST00000579558 PSMA1P25786 263 aaKnown RBP19.17■□□□□ 0.66
SHMT1-206ENST00000579558 MNDAP41218 407 aa19.17■□□□□ 0.66
SHMT1-206ENST00000579558 HABP2Q14520 560 aaPredicted RBP19.17■□□□□ 0.66
SHMT1-206ENST00000579558 TBCEQ15813 527 aaPredicted RBP19.17■□□□□ 0.66
SHMT1-206ENST00000579558 TMEM91Q6ZNR0 172 aa19.17■□□□□ 0.66
SHMT1-206ENST00000579558 Q8N2B8 174 aa19.17■□□□□ 0.66
SHMT1-206ENST00000579558 KLHDC1Q8N7A1 406 aa19.17■□□□□ 0.66
SHMT1-206ENST00000579558 UBALD1Q8TB05 177 aa19.17■□□□□ 0.66
SHMT1-206ENST00000579558 TOMM40LQ969M1 308 aa19.17■□□□□ 0.66
SHMT1-206ENST00000579558 TRAPPC2LQ9UL33 140 aa19.17■□□□□ 0.66
SHMT1-206ENST00000579558 ORC5O43913 435 aa19.16■□□□□ 0.66
SHMT1-206ENST00000579558 VSIG10L2P0DP72 767 aa19.16■□□□□ 0.66
SHMT1-206ENST00000579558 HERPUD1Q15011 391 aa19.16■□□□□ 0.66
SHMT1-206ENST00000579558 SYT6Q5T7P8 510 aaPredicted RBP19.16■□□□□ 0.66
SHMT1-206ENST00000579558 SIGIRRQ6IA17 410 aa19.16■□□□□ 0.66
SHMT1-206ENST00000579558 OR10K2Q6IF99 312 aa19.16■□□□□ 0.66
SHMT1-206ENST00000579558 Q6ZTK2 550 aa19.16■□□□□ 0.66
SHMT1-206ENST00000579558 OR4K15Q8NH41 348 aa19.16■□□□□ 0.66
SHMT1-206ENST00000579558 PKD1L1Q8TDX9 2849 aa19.16■□□□□ 0.66
SHMT1-206ENST00000579558 UBE2QL1A1L167 161 aa19.15■□□□□ 0.66
SHMT1-206ENST00000579558 SDCBPO00560 298 aaPredicted RBP19.15■□□□□ 0.66
SHMT1-206ENST00000579558 PDCD6O75340 191 aa19.15■□□□□ 0.66
SHMT1-206ENST00000579558 ARL6IP5O75915 188 aa19.15■□□□□ 0.66
SHMT1-206ENST00000579558 GLAP06280 429 aa19.15■□□□□ 0.66
SHMT1-206ENST00000579558 VSIG8P0DPA2 414 aa19.15■□□□□ 0.66
SHMT1-206ENST00000579558 HTR2CP28335 458 aa19.15■□□□□ 0.66
SHMT1-206ENST00000579558 MADCAM1Q13477 382 aa19.15■□□□□ 0.66
SHMT1-206ENST00000579558 ARSJQ5FYB0 599 aaPredicted RBP19.15■□□□□ 0.66
SHMT1-206ENST00000579558 ZNF367Q7RTV3 350 aa19.15■□□□□ 0.66
SHMT1-206ENST00000579558 C16orf82Q7Z2V1 217 aa19.15■□□□□ 0.66
SHMT1-206ENST00000579558 OR52M1Q8NGK5 317 aa19.15■□□□□ 0.66
SHMT1-206ENST00000579558 OR10X1Q8NGY0 326 aa19.15■□□□□ 0.66
SHMT1-206ENST00000579558 CAPSLQ8WWF8 208 aa19.15■□□□□ 0.66
SHMT1-206ENST00000579558 TMEM59Q9BXS4 323 aa19.15■□□□□ 0.66
SHMT1-206ENST00000579558 A0A1W2PPE3 182 aa19.14■□□□□ 0.65
SHMT1-206ENST00000579558 SLC22A1O15245 554 aa19.14■□□□□ 0.65
SHMT1-206ENST00000579558 CA11O75493 328 aa19.14■□□□□ 0.65
SHMT1-206ENST00000579558 BLCAPP62952 87 aa19.14■□□□□ 0.65
SHMT1-206ENST00000579558 NKAPLQ5M9Q1 402 aa19.14■□□□□ 0.65
SHMT1-206ENST00000579558 C6orf183Q5T699 404 aa19.14■□□□□ 0.65
SHMT1-206ENST00000579558 OR6M1Q8NGM8 313 aa19.14■□□□□ 0.65
SHMT1-206ENST00000579558 AKR1E2Q96JD6 320 aa19.14■□□□□ 0.65
SHMT1-206ENST00000579558 LIN7BQ9HAP6 207 aa19.14■□□□□ 0.65
SHMT1-206ENST00000579558 SERTAD4Q9NUC0 356 aa19.14■□□□□ 0.65
SHMT1-206ENST00000579558 GFOD1Q9NXC2 390 aa19.14■□□□□ 0.65
SHMT1-206ENST00000579558 IGHV3-43A0A0B4J1X8 118 aa19.13■□□□□ 0.65
SHMT1-206ENST00000579558 C12orf77C9JDV5 145 aa19.13■□□□□ 0.65
SHMT1-206ENST00000579558 IGHV3-43DP0DP04 118 aa19.13■□□□□ 0.65
SHMT1-206ENST00000579558 CD37P11049 281 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms