RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 C2orf76Q3KRA6 126 aa12.85□□□□□ -0.35
CHD3-215ENST00000572750 TIMM50Q3ZCQ8 353 aa12.85□□□□□ -0.35
CHD3-215ENST00000572750 MIDNQ504T8 468 aa12.85□□□□□ -0.35
CHD3-215ENST00000572750 UTF1Q5T230 341 aa12.85□□□□□ -0.35
CHD3-215ENST00000572750 HEPN1Q6WQI6 88 aa12.85□□□□□ -0.35
CHD3-215ENST00000572750 UBALD1Q8TB05 177 aa12.85□□□□□ -0.35
CHD3-215ENST00000572750 NEDD4LQ96PU5 975 aa12.85□□□□□ -0.35
CHD3-215ENST00000572750 URM1Q9BTM9 101 aaKnown RBP12.85□□□□□ -0.35
CHD3-215ENST00000572750 NCOR1P1Q9H4R4 102 aa12.85□□□□□ -0.35
CHD3-215ENST00000572750 ZNRD1Q9P1U0 126 aa12.85□□□□□ -0.35
CHD3-215ENST00000572750 NOTOA8MTQ0 251 aa12.84□□□□□ -0.35
CHD3-215ENST00000572750 SOCS1O15524 211 aa12.84□□□□□ -0.35
CHD3-215ENST00000572750 MT-ND4P03905 459 aa12.84□□□□□ -0.35
CHD3-215ENST00000572750 CGB3P0DN86 165 aa12.84□□□□□ -0.35
CHD3-215ENST00000572750 CGB7P0DN87 165 aa12.84□□□□□ -0.35
CHD3-215ENST00000572750 BLVRBP30043 206 aaPredicted RBP12.84□□□□□ -0.35
CHD3-215ENST00000572750 LSM3P62310 102 aaKnown RBP12.84□□□□□ -0.35
CHD3-215ENST00000572750 SLC9A3R2Q15599 337 aa12.84□□□□□ -0.35
CHD3-215ENST00000572750 ZNF626Q68DY1 528 aa12.84□□□□□ -0.35
CHD3-215ENST00000572750 SFXN4Q6P4A7 337 aa12.84□□□□□ -0.35
CHD3-215ENST00000572750 Q6YL49 198 aa12.84□□□□□ -0.35
CHD3-215ENST00000572750 LHFPL4Q7Z7J7 247 aa12.84□□□□□ -0.35
CHD3-215ENST00000572750 TPRA1Q86W33 373 aa12.84□□□□□ -0.35
CHD3-215ENST00000572750 LDLRAD3Q86YD5 345 aa12.84□□□□□ -0.35
CHD3-215ENST00000572750 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.84□□□□□ -0.35
CHD3-215ENST00000572750 ZNF565Q8N9K5 539 aa12.84□□□□□ -0.35
CHD3-215ENST00000572750 OR11H6Q8NGC7 330 aa12.84□□□□□ -0.35
CHD3-215ENST00000572750 OR4K15Q8NH41 348 aa12.84□□□□□ -0.35
CHD3-215ENST00000572750 RFESDQ8TAC1 157 aa12.84□□□□□ -0.35
CHD3-215ENST00000572750 AJUBAQ96IF1 538 aa12.84□□□□□ -0.35
CHD3-215ENST00000572750 KIRREL1Q96J84 757 aa12.84□□□□□ -0.35
CHD3-215ENST00000572750 CLEC7AQ9BXN2 247 aa12.84□□□□□ -0.35
CHD3-215ENST00000572750 MRPS26Q9BYN8 205 aaKnown RBP12.84□□□□□ -0.35
CHD3-215ENST00000572750 PRDM13Q9H4Q3 707 aa12.84□□□□□ -0.35
CHD3-215ENST00000572750 ZNF286AQ9HBT8 521 aa12.84□□□□□ -0.35
CHD3-215ENST00000572750 FBLN5Q9UBX5 448 aa12.84□□□□□ -0.35
CHD3-215ENST00000572750 DAPK2Q9UIK4 370 aa12.84□□□□□ -0.35
CHD3-215ENST00000572750 NOTCH1P46531 2555 aa12.83□□□□□ -0.35
CHD3-215ENST00000572750 FOXI3A8MTJ6 420 aaPredicted RBP12.83□□□□□ -0.36
CHD3-215ENST00000572750 TRIM77I1YAP6 450 aa12.83□□□□□ -0.36
CHD3-215ENST00000572750 IGHV4-59P01825 116 aa12.83□□□□□ -0.36
CHD3-215ENST00000572750 NFYBP25208 207 aa12.83□□□□□ -0.36
CHD3-215ENST00000572750 VEGFCP49767 419 aa12.83□□□□□ -0.36
CHD3-215ENST00000572750 LGALS4P56470 323 aa12.83□□□□□ -0.36
CHD3-215ENST00000572750 LDLRAD2Q5SZI1 272 aa12.83□□□□□ -0.36
CHD3-215ENST00000572750 GAPTQ8N292 157 aa12.83□□□□□ -0.36
CHD3-215ENST00000572750 OR13F1Q8NGS4 319 aa12.83□□□□□ -0.36
CHD3-215ENST00000572750 LGALS14Q8TCE9 139 aa12.83□□□□□ -0.36
CHD3-215ENST00000572750 LEAP2Q969E1 77 aa12.83□□□□□ -0.36
CHD3-215ENST00000572750 FAAP24Q9BTP7 215 aa12.83□□□□□ -0.36
CHD3-215ENST00000572750 FUNDC2Q9BWH2 189 aa12.83□□□□□ -0.36
CHD3-215ENST00000572750 TRAPPC2LQ9UL33 140 aa12.83□□□□□ -0.36
CHD3-215ENST00000572750 C15orf65H3BRN8 121 aa12.82□□□□□ -0.36
CHD3-215ENST00000572750 H3BUI4 141 aa12.82□□□□□ -0.36
CHD3-215ENST00000572750 IGHV3-7P01780 117 aa12.82□□□□□ -0.36
CHD3-215ENST00000572750 GLAP06280 429 aa12.82□□□□□ -0.36
CHD3-215ENST00000572750 RNASE1P07998 156 aaKnown RBP12.82□□□□□ -0.36
CHD3-215ENST00000572750 MOGAT2Q3SYC2 334 aa12.82□□□□□ -0.36
CHD3-215ENST00000572750 PLA1AQ53H76 456 aa12.82□□□□□ -0.36
CHD3-215ENST00000572750 OR52W1Q6IF63 320 aa12.82□□□□□ -0.36
CHD3-215ENST00000572750 GDPGP1Q6ZNW5 385 aa12.82□□□□□ -0.36
CHD3-215ENST00000572750 FAM89BQ8N5H3 189 aa12.82□□□□□ -0.36
CHD3-215ENST00000572750 MRPL30Q8TCC3 161 aaKnown RBP12.82□□□□□ -0.36
CHD3-215ENST00000572750 SSMEM1Q8WWF3 244 aa12.82□□□□□ -0.36
CHD3-215ENST00000572750 ARHGAP5-AS1Q96IT6 56 aa12.82□□□□□ -0.36
CHD3-215ENST00000572750 LINC00574Q9H8X3 128 aa12.82□□□□□ -0.36
CHD3-215ENST00000572750 PLEKHJ1Q9NW61 149 aa12.82□□□□□ -0.36
CHD3-215ENST00000572750 IDI2-AS1Q9NZ38 188 aa12.82□□□□□ -0.36
CHD3-215ENST00000572750 C12orf77C9JDV5 145 aa12.81□□□□□ -0.36
CHD3-215ENST00000572750 NPIPB11E5RHQ5 1161 aa12.81□□□□□ -0.36
CHD3-215ENST00000572750 CLDN34H7C241 214 aa12.81□□□□□ -0.36
CHD3-215ENST00000572750 CA11O75493 328 aa12.81□□□□□ -0.36
CHD3-215ENST00000572750 SNRPBP14678 240 aaKnown RBP12.81□□□□□ -0.36
CHD3-215ENST00000572750 RCC1P18754 421 aaPredicted RBP12.81□□□□□ -0.36
CHD3-215ENST00000572750 CD34P28906 385 aa12.81□□□□□ -0.36
CHD3-215ENST00000572750 RANBP1P43487 201 aa12.81□□□□□ -0.36
CHD3-215ENST00000572750 IER3P46695 156 aa12.81□□□□□ -0.36
CHD3-215ENST00000572750 NCS1P62166 190 aa12.81□□□□□ -0.36
CHD3-215ENST00000572750 DYNAPQ8N1N2 210 aa12.81□□□□□ -0.36
CHD3-215ENST00000572750 ABHD12Q8N2K0 398 aa12.81□□□□□ -0.36
CHD3-215ENST00000572750 PRR18Q8N4B5 295 aa12.81□□□□□ -0.36
CHD3-215ENST00000572750 BEND2Q8NDZ0 799 aa12.81□□□□□ -0.36
CHD3-215ENST00000572750 OR56B1Q8NGI3 324 aa12.81□□□□□ -0.36
CHD3-215ENST00000572750 OR4P4Q8NGL7 312 aa12.81□□□□□ -0.36
CHD3-215ENST00000572750 FAM216AQ8WUB2 273 aa12.81□□□□□ -0.36
CHD3-215ENST00000572750 ZFAND2BQ8WV99 257 aa12.81□□□□□ -0.36
CHD3-215ENST00000572750 ARL11Q969Q4 196 aa12.81□□□□□ -0.36
CHD3-215ENST00000572750 HDHD3Q9BSH5 251 aaPredicted RBP12.81□□□□□ -0.36
CHD3-215ENST00000572750 CHIAQ9BZP6 476 aa12.81□□□□□ -0.36
CHD3-215ENST00000572750 ZMAT3Q9HA38 289 aaKnown RBP12.81□□□□□ -0.36
CHD3-215ENST00000572750 AK3Q9UIJ7 227 aa12.81□□□□□ -0.36
CHD3-215ENST00000572750 RAB22AQ9UL26 194 aa12.81□□□□□ -0.36
CHD3-215ENST00000572750 TBL2Q9Y4P3 447 aaKnown RBP12.81□□□□□ -0.36
CHD3-215ENST00000572750 A0A087X0M5 115 aa12.8□□□□□ -0.36
CHD3-215ENST00000572750 IGHV3-43A0A0B4J1X8 118 aa12.8□□□□□ -0.36
CHD3-215ENST00000572750 A0A1B0GX30 115 aa12.8□□□□□ -0.36
CHD3-215ENST00000572750 IGHV3-43DP0DP04 118 aa12.8□□□□□ -0.36
CHD3-215ENST00000572750 RAB6AP20340 208 aa12.8□□□□□ -0.36
CHD3-215ENST00000572750 GNG10P50151 68 aa12.8□□□□□ -0.36
CHD3-215ENST00000572750 TMEM50BP56557 158 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms