RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 TOR1AO14656 332 aa7.4□□□□□ -1.22
CIITA-208ENST00000572665 RBMXL2O75526 392 aaKnown RBP7.4□□□□□ -1.22
CIITA-208ENST00000572665 CIB2O75838 187 aa7.4□□□□□ -1.22
CIITA-208ENST00000572665 ISG15P05161 165 aa7.4□□□□□ -1.22
CIITA-208ENST00000572665 PRKACAP17612 351 aa7.4□□□□□ -1.22
CIITA-208ENST00000572665 PAX6P26367 422 aa7.4□□□□□ -1.22
CIITA-208ENST00000572665 MNDAP41218 407 aa7.4□□□□□ -1.22
CIITA-208ENST00000572665 POU3F4P49335 361 aa7.4□□□□□ -1.22
CIITA-208ENST00000572665 PRRX1P54821 245 aa7.4□□□□□ -1.22
CIITA-208ENST00000572665 P2RX3P56373 397 aa7.4□□□□□ -1.22
CIITA-208ENST00000572665 SLC35A2P78381 396 aa7.4□□□□□ -1.22
CIITA-208ENST00000572665 ZNF91Q05481 1191 aa7.4□□□□□ -1.22
CIITA-208ENST00000572665 ZSCAN26Q16670 478 aa7.4□□□□□ -1.22
CIITA-208ENST00000572665 CCBE1Q6UXH8 406 aaPredicted RBP7.4□□□□□ -1.22
CIITA-208ENST00000572665 UTS2BQ765I0 119 aa7.4□□□□□ -1.22
CIITA-208ENST00000572665 DYNAPQ8N1N2 210 aa7.4□□□□□ -1.22
CIITA-208ENST00000572665 CHST4Q8NCG5 386 aa7.4□□□□□ -1.22
CIITA-208ENST00000572665 OR5AU1Q8NGC0 362 aa7.4□□□□□ -1.22
CIITA-208ENST00000572665 OR4D6Q8NGJ1 314 aa7.4□□□□□ -1.22
CIITA-208ENST00000572665 TRUB1Q8WWH5 349 aaKnown RBP7.4□□□□□ -1.22
CIITA-208ENST00000572665 OPALINQ96PE5 141 aa7.4□□□□□ -1.22
CIITA-208ENST00000572665 OR5M11Q96RB7 305 aa7.4□□□□□ -1.22
CIITA-208ENST00000572665 MMP28Q9H239 520 aa7.4□□□□□ -1.22
CIITA-208ENST00000572665 PCDHB16Q9NRJ7 776 aa7.4□□□□□ -1.22
CIITA-208ENST00000572665 IMPAD1Q9NX62 359 aa7.4□□□□□ -1.22
CIITA-208ENST00000572665 GNG8Q9UK08 70 aa7.4□□□□□ -1.22
CIITA-208ENST00000572665 AP4S1Q9Y587 144 aa7.4□□□□□ -1.22
CIITA-208ENST00000572665 TSSC4Q9Y5U2 329 aaPredicted RBP7.4□□□□□ -1.22
CIITA-208ENST00000572665 NOTCH1P46531 2555 aa7.4□□□□□ -1.23
CIITA-208ENST00000572665 CMYA5Q8N3K9 4069 aa7.39□□□□□ -1.23
CIITA-208ENST00000572665 TCRBV4S1A1TA0A5B7 111 aa7.39□□□□□ -1.23
CIITA-208ENST00000572665 OOSP1A8MZH6 123 aa7.39□□□□□ -1.23
CIITA-208ENST00000572665 MAGEB4O15481 346 aaPredicted RBP7.39□□□□□ -1.23
CIITA-208ENST00000572665 ATF1P18846 271 aa7.39□□□□□ -1.23
CIITA-208ENST00000572665 BLCAPP62952 87 aa7.39□□□□□ -1.23
CIITA-208ENST00000572665 BDH1Q02338 343 aa7.39□□□□□ -1.23
CIITA-208ENST00000572665 DCTN2Q13561 401 aaKnown RBP7.39□□□□□ -1.23
CIITA-208ENST00000572665 MEDAGQ5VYS4 303 aa7.39□□□□□ -1.23
CIITA-208ENST00000572665 HEPN1Q6WQI6 88 aa7.39□□□□□ -1.23
CIITA-208ENST00000572665 SAXO1Q8IYX7 474 aa7.39□□□□□ -1.23
CIITA-208ENST00000572665 LYG1Q8N1E2 194 aa7.39□□□□□ -1.23
CIITA-208ENST00000572665 ABHD12Q8N2K0 398 aa7.39□□□□□ -1.23
CIITA-208ENST00000572665 TMEM217Q8N7C4 229 aa7.39□□□□□ -1.23
CIITA-208ENST00000572665 SLC25A33Q9BSK2 321 aa7.39□□□□□ -1.23
CIITA-208ENST00000572665 CHST6Q9GZX3 395 aa7.39□□□□□ -1.23
CIITA-208ENST00000572665 RBFOX1Q9NWB1 397 aaKnown RBP7.39□□□□□ -1.23
CIITA-208ENST00000572665 OR6C3Q9NZP0 311 aa7.39□□□□□ -1.23
CIITA-208ENST00000572665 ZMAT5Q9UDW3 170 aaKnown RBP7.39□□□□□ -1.23
CIITA-208ENST00000572665 HHLA2Q9UM44 414 aa7.39□□□□□ -1.23
CIITA-208ENST00000572665 AMMECR1Q9Y4X0 333 aaPredicted RBP7.39□□□□□ -1.23
CIITA-208ENST00000572665 IGKV1-27A0A075B6S5 117 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 DAPL1A0PJW8 107 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 ZNF729A6NN14 1252 aaPredicted RBP7.38□□□□□ -1.23
CIITA-208ENST00000572665 F8VVB4 439 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 F8VWA3 439 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 H3BSH0 61 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 M0R129 80 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 MITFO75030 526 aaPredicted RBP7.38□□□□□ -1.23
CIITA-208ENST00000572665 ENTPD6O75354 484 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 OR2F2O95006 317 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 CSN2P05814 226 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 HTR1AP08908 422 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 FAM106CPP0CH98 169 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 DBTP11182 482 aaKnown RBP7.38□□□□□ -1.23
CIITA-208ENST00000572665 ZNF44P15621 663 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 BCL3P20749 454 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 LMO1P25800 156 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 PTGFRP43088 359 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 CCR9P51686 369 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 RPP30P78346 268 aaKnown RBP7.38□□□□□ -1.23
CIITA-208ENST00000572665 MRPL28Q13084 256 aaKnown RBP7.38□□□□□ -1.23
CIITA-208ENST00000572665 PDZK1IP1Q13113 114 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 SSX6Q7RTT6 188 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 PRSS35Q8N3Z0 413 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 TPRX1Q8N7U7 411 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 ZNF565Q8N9K5 539 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 SETD9Q8NE22 299 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 WFDC9Q8NEX5 89 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 OR51D1Q8NGF3 324 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 OR4P4Q8NGL7 312 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 OR13C3Q8NGS6 347 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 HAVCR2Q8TDQ0 301 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 WIPF2Q8TF74 440 aaPredicted RBP7.38□□□□□ -1.23
CIITA-208ENST00000572665 CORO2AQ92828 525 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 PHF21AQ96BD5 680 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 CENPNQ96H22 339 aaPredicted RBP7.38□□□□□ -1.23
CIITA-208ENST00000572665 RBM14Q96PK6 669 aaKnown RBP7.38□□□□□ -1.23
CIITA-208ENST00000572665 CIB1Q99828 191 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 GABARAPL3Q9BY60 117 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 COMMD4Q9H0A8 199 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 RIBC2Q9H4K1 309 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 HMG20AQ9NP66 347 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 GSTK1Q9Y2Q3 226 aa7.38□□□□□ -1.23
CIITA-208ENST00000572665 MEX3AA1L020 520 aaKnown RBP7.37□□□□□ -1.23
CIITA-208ENST00000572665 H3BNX3 289 aa7.37□□□□□ -1.23
CIITA-208ENST00000572665 SIRPB1O00241 398 aa7.37□□□□□ -1.23
CIITA-208ENST00000572665 MAGEB3O15480 346 aa7.37□□□□□ -1.23
CIITA-208ENST00000572665 KDM4BO94953 1096 aa7.37□□□□□ -1.23
CIITA-208ENST00000572665 OR2H2O95918 312 aa7.37□□□□□ -1.23
CIITA-208ENST00000572665 MT-ND2P03891 347 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 168.8 ms