RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 RSPO3Q9BXY4 272 aaPredicted RBP2.77□□□□□ -1.97
VPS35-208ENST00000568612 SLC17A9Q9BYT1 436 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 PPDPFQ9H3Y8 114 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 ZDHHC11Q9H8X9 412 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 KCNJ16Q9NPI9 418 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 CYTL1Q9NRR1 136 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 DCAF13Q9NV06 445 aaKnown RBP2.77□□□□□ -1.97
VPS35-208ENST00000568612 TMEM242Q9NWH2 141 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 CLN6Q9NWW5 311 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 MED29Q9NX70 200 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 DNAJC27Q9NZQ0 273 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 KLRF1Q9NZS2 232 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 COMMD9Q9P000 198 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 ZNF581Q9P0T4 197 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 B4GALT7Q9UBV7 327 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 HSF4Q9ULV5 492 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 SLC7A7Q9UM01 511 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 HS3ST2Q9Y278 367 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 MRPS28Q9Y2Q9 187 aaKnown RBP2.77□□□□□ -1.97
VPS35-208ENST00000568612 COQ4Q9Y3A0 265 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 PAM16Q9Y3D7 125 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 SBF2Q86WG5 1849 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 CACNA1IQ9P0X4 2223 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 A0A1B0GUS0 222 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 IRGMA1A4Y4 181 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 TMEM189A5PLL7 270 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 OR2T8A6NH00 312 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 LIPT2A6NK58 231 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 ANKRD30BLA7E2S9 258 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 F5H5T6 163 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 K7EP34 96 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 DEGS1O15121 323 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 HMGB3O15347 200 aaKnown RBP2.76□□□□□ -1.97
VPS35-208ENST00000568612 ST8SIA3O43173 380 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 ZNF207O43670 478 aaKnown RBP2.76□□□□□ -1.97
VPS35-208ENST00000568612 MPZL1O95297 269 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 ETHE1O95571 254 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 CLDN1O95832 211 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 NRASP01111 189 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 APOC2P02655 101 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 ORM1P02763 201 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 CXCL10P02778 98 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 HLA-DPB1P04440 258 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 HLA-DQB2P05538 268 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 HIST1H1EP10412 219 aaKnown RBP2.76□□□□□ -1.97
VPS35-208ENST00000568612 UNGP13051 313 aaPredicted RBP2.76□□□□□ -1.97
VPS35-208ENST00000568612 CYBAP13498 195 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 ARSAP15289 507 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 EPCAMP16422 314 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 CELP19835 753 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 PYCR1P32322 319 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 FAUP35544 74 aaKnown RBP2.76□□□□□ -1.97
VPS35-208ENST00000568612 ARL2P36404 184 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 GUCA1AP43080 201 aaPredicted RBP2.76□□□□□ -1.97
VPS35-208ENST00000568612 KIR2DS4P43632 304 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 GYG1P46976 350 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 UQCRFS1P47985 274 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 PRLHRP49683 370 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 THBS3P49746 956 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 HINT1P49773 126 aaPredicted RBP2.76□□□□□ -1.97
VPS35-208ENST00000568612 GPM6AP51674 278 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 HMGCS2P54868 508 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 CAV3P56539 151 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 TCTAP57738 103 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 SNRPGP62308 76 aaKnown RBP2.76□□□□□ -1.97
VPS35-208ENST00000568612 RHOBP62745 196 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 PSG9Q00887 426 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 FOXF1Q12946 379 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 MRPL23Q16540 153 aaKnown RBP2.76□□□□□ -1.97
VPS35-208ENST00000568612 C2orf68Q2NKX9 166 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 ITPRIPL2Q3MIP1 535 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 DCAF4L1Q3SXM0 396 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 LINC00303Q3SY05 128 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 SPATA45Q537H7 98 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 TP53I3Q53FA7 332 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 PAGE3Q5JUK9 113 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 ACTL10Q5JWF8 245 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 FAM162BQ5T6X4 162 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 MRPL54Q6P161 138 aaKnown RBP2.76□□□□□ -1.97
VPS35-208ENST00000568612 SLC27A1Q6PCB7 646 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 PARM1Q6UWI2 310 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 TMEM184AQ6ZMB5 413 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 Q6ZRG5 221 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 C19orf35Q6ZS72 473 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 Q6ZSR6 202 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 Q6ZVH6 145 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 RNF144BQ7Z419 303 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 TSEN54Q7Z6J9 526 aaKnown RBP2.76□□□□□ -1.97
VPS35-208ENST00000568612 LRP11Q86VZ4 500 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 CALHM3Q86XJ0 350 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 MARCH9Q86YJ5 346 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 C1orf174Q8IYL3 243 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 FBXL14Q8N1E6 418 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 ZNF676Q8N7Q3 588 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 SUMF2Q8NBJ7 301 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 INO80EQ8NBZ0 244 aaPredicted RBP2.76□□□□□ -1.97
VPS35-208ENST00000568612 OR8G5Q8NG78 346 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 OR13G1Q8NGZ3 307 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 FAM110DQ8TAY7 271 aaPredicted RBP2.76□□□□□ -1.97
VPS35-208ENST00000568612 SLC25A40Q8TBP6 338 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms