RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 DEPPQ9NTK1 212 aa11.39□□□□□ -0.59
VPS4A-204ENST00000566354 DKKL1Q9UK85 242 aa11.39□□□□□ -0.59
VPS4A-204ENST00000566354 IGF2RP11717 2491 aa11.39□□□□□ -0.59
VPS4A-204ENST00000566354 NCKAP5O14513 1909 aa11.39□□□□□ -0.59
VPS4A-204ENST00000566354 IGKV1-12A0A0C4DH73 117 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 A0A0J9YW62 118 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 A0A1W2PPE3 182 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 FAM221AA4D161 298 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 GJE1A6NN92 205 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 IGKV1D-12P01611 117 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 P04436 131 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 FUT6P51993 359 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 SOHLH1Q5JUK2 328 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 FAM185AQ8N0U4 392 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 OR2C3Q8N628 320 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 SLC35G3Q8N808 338 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 FAM213BQ8TBF2 198 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 KCNE4Q8WWG9 221 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 HES7Q9BYE0 225 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 RIMS4Q9H426 269 aaPredicted RBP11.38□□□□□ -0.59
VPS4A-204ENST00000566354 SLC7A11Q9UPY5 501 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 C3orf85A0A1B0GTC6 90 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 hCG_1809904A0A1W2PP81 198 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 A0A1W2PR64 198 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 A0A1W2PRV1 198 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 OR6C6A6NF89 314 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 TNFSF11O14788 317 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 MPPED1O15442 326 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 DNPH1O43598 174 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 ARG1P05089 322 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 AADACP22760 399 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 ADAM5Q6NVV9 412 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 TMEM182Q6ZP80 229 aaPredicted RBP11.38□□□□□ -0.59
VPS4A-204ENST00000566354 TP53RKQ96S44 253 aa11.38□□□□□ -0.59
VPS4A-204ENST00000566354 ZNF891A8MT65 544 aaPredicted RBP11.37□□□□□ -0.59
VPS4A-204ENST00000566354 PPYP01298 95 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 OR13C7P0DN81 318 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 PAX1P15863 534 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 FUT3P21217 361 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 PPP1CCP36873 323 aaKnown RBP11.37□□□□□ -0.59
VPS4A-204ENST00000566354 CCL11P51671 97 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 DEFB109BQ30KR1 87 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 KRTAP27-1Q3LI81 207 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 MEX3BQ6ZN04 569 aaKnown RBP11.37□□□□□ -0.59
VPS4A-204ENST00000566354 C1QL4Q86Z23 238 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 SUMF2Q8NBJ7 301 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 OR8G5Q8NG78 346 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 CPT1CQ8TCG5 803 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 TMEM222Q9H0R3 208 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 C11orf1Q9H5F2 150 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 TMEM38BQ9NVV0 291 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 GFOD1Q9NXC2 390 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 NCOR2Q9Y618 2525 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 PINLYPA6NC86 204 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 TRDCB7Z8K6 153 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 AP4M1O00189 453 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 RAC3P60763 192 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 OR1C1Q15619 314 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 OR14L1PQ8NHC6 308 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 TECTBQ96PL2 329 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 SPIN2AQ99865 258 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 SPIN2BQ9BPZ2 258 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 ZNF552Q9H707 407 aaPredicted RBP11.37□□□□□ -0.59
VPS4A-204ENST00000566354 ABI3Q9P2A4 366 aa11.37□□□□□ -0.59
VPS4A-204ENST00000566354 A0A1W2PPE2 198 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 BTBD17A6NE02 478 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 RBFOX3A6NFN3 312 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 IFNA17P01571 189 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 ZNF32P17041 273 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 NKX2-1P43699 371 aaPredicted RBP11.36□□□□□ -0.59
VPS4A-204ENST00000566354 HTR5AP47898 357 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 RBM11P57052 281 aaKnown RBP11.36□□□□□ -0.59
VPS4A-204ENST00000566354 SOX8P57073 446 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 C9orf152Q5JTZ5 239 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 FDCSPQ8NFU4 85 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 OR2G3Q8NGZ4 309 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 TMEM56Q96MV1 263 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 SRXN1Q9BYN0 137 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 SLC25A31Q9H0C2 315 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 ZNF442Q9H7R0 627 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 PLEKHF2Q9H8W4 249 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 MSRB2Q9Y3D2 182 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 TMEM56-RWDD3S4R434 201 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 hCG_38984A0A1B0GV85 526 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 NKX2-6A6NCS4 301 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 FAM24AA6NFZ4 105 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 LRRC3CA6NJW4 275 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 M0QZK8 103 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 HSPA12AO43301 675 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 PITX3O75364 302 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 OR2C1O95371 312 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 OR8U8P0C7N1 319 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 RFPL3SP0C7P2 107 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 PRSS12P56730 875 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 OR2B8PP59922 312 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 ABHD14BQ96IU4 210 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 RARRES2Q99969 163 aa11.36□□□□□ -0.59
VPS4A-204ENST00000566354 PUS1Q9Y606 427 aaKnown RBP eCLIP11.36□□□□□ -0.59
VPS4A-204ENST00000566354 CACNA1GO43497 2377 aa11.35□□□□□ -0.59
VPS4A-204ENST00000566354 MED19A0JLT2 244 aaPredicted RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms