RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 DLX6P56179 175 aa13.66□□□□□ -0.22
VPS4A-202ENST00000562754 CR1LQ2VPA4 569 aa13.66□□□□□ -0.22
VPS4A-202ENST00000562754 CD276Q5ZPR3 534 aa13.66□□□□□ -0.22
VPS4A-202ENST00000562754 UBALD1Q8TB05 177 aa13.66□□□□□ -0.22
VPS4A-202ENST00000562754 CORO2AQ92828 525 aa13.66□□□□□ -0.22
VPS4A-202ENST00000562754 MMP26Q9NRE1 261 aa13.66□□□□□ -0.22
VPS4A-202ENST00000562754 B4DSR2 109 aa13.65□□□□□ -0.22
VPS4A-202ENST00000562754 C12orf77C9JDV5 145 aa13.65□□□□□ -0.22
VPS4A-202ENST00000562754 C15orf65H3BRN8 121 aa13.65□□□□□ -0.22
VPS4A-202ENST00000562754 SMAD7O15105 426 aaKnown RBP13.65□□□□□ -0.22
VPS4A-202ENST00000562754 ENSAO43768 121 aaKnown RBP13.65□□□□□ -0.22
VPS4A-202ENST00000562754 LANCL1O43813 399 aa13.65□□□□□ -0.22
VPS4A-202ENST00000562754 MSMBP08118 114 aa13.65□□□□□ -0.22
VPS4A-202ENST00000562754 CBX5P45973 191 aa13.65□□□□□ -0.22
VPS4A-202ENST00000562754 HLA-DRB3P79483 266 aa13.65□□□□□ -0.22
VPS4A-202ENST00000562754 HMGN3Q15651 99 aa13.65□□□□□ -0.22
VPS4A-202ENST00000562754 C17orf58Q2M2W7 97 aa13.65□□□□□ -0.22
VPS4A-202ENST00000562754 Q6ZS49 121 aa13.65□□□□□ -0.22
VPS4A-202ENST00000562754 HOGA1Q86XE5 327 aa13.65□□□□□ -0.22
VPS4A-202ENST00000562754 FCAMRQ8WWV6 532 aa13.65□□□□□ -0.22
VPS4A-202ENST00000562754 SNAPC3Q92966 411 aa13.65□□□□□ -0.22
VPS4A-202ENST00000562754 TRIM63Q969Q1 353 aa13.65□□□□□ -0.22
VPS4A-202ENST00000562754 MSI2Q96DH6 328 aaKnown RBP13.65□□□□□ -0.22
VPS4A-202ENST00000562754 COX4I2Q96KJ9 171 aa13.65□□□□□ -0.22
VPS4A-202ENST00000562754 ST6GALNAC5Q9BVH7 336 aa13.65□□□□□ -0.22
VPS4A-202ENST00000562754 CALYQ9NYX4 217 aa13.65□□□□□ -0.22
VPS4A-202ENST00000562754 KLK11Q9UBX7 282 aa13.65□□□□□ -0.22
VPS4A-202ENST00000562754 MTFP1Q9UDX5 166 aa13.65□□□□□ -0.22
VPS4A-202ENST00000562754 UBE2J1Q9Y385 318 aaPredicted RBP13.65□□□□□ -0.22
VPS4A-202ENST00000562754 RBMX2Q9Y388 322 aaKnown RBP13.65□□□□□ -0.22
VPS4A-202ENST00000562754 VPS13CQ709C8 3753 aa13.65□□□□□ -0.22
VPS4A-202ENST00000562754 ZNF729A6NN14 1252 aaPredicted RBP13.64□□□□□ -0.23
VPS4A-202ENST00000562754 POM121CA8CG34 1229 aa13.64□□□□□ -0.23
VPS4A-202ENST00000562754 J3QRK9 145 aa13.64□□□□□ -0.23
VPS4A-202ENST00000562754 LIPFP07098 398 aa13.64□□□□□ -0.23
VPS4A-202ENST00000562754 ZNF728P0DKX0 622 aa13.64□□□□□ -0.23
VPS4A-202ENST00000562754 NAT1P18440 290 aa13.64□□□□□ -0.23
VPS4A-202ENST00000562754 GDNFP39905 211 aa13.64□□□□□ -0.23
VPS4A-202ENST00000562754 C6orf183Q5T699 404 aa13.64□□□□□ -0.23
VPS4A-202ENST00000562754 OR52W1Q6IF63 320 aa13.64□□□□□ -0.23
VPS4A-202ENST00000562754 Q8N402 240 aa13.64□□□□□ -0.23
VPS4A-202ENST00000562754 GDPD1Q8N9F7 314 aa13.64□□□□□ -0.23
VPS4A-202ENST00000562754 LINC01356Q8N9X3 169 aa13.64□□□□□ -0.23
VPS4A-202ENST00000562754 OR1L1Q8NH94 360 aa13.64□□□□□ -0.23
VPS4A-202ENST00000562754 ZNF714Q96N38 554 aa13.64□□□□□ -0.23
VPS4A-202ENST00000562754 WDR12Q9GZL7 423 aaKnown RBP13.64□□□□□ -0.23
VPS4A-202ENST00000562754 TAF9BQ9HBM6 251 aa13.64□□□□□ -0.23
VPS4A-202ENST00000562754 IFT46Q9NQC8 304 aa13.64□□□□□ -0.23
VPS4A-202ENST00000562754 TAS2R3Q9NYW6 316 aa13.64□□□□□ -0.23
VPS4A-202ENST00000562754 ABCA1O95477 2261 aa13.64□□□□□ -0.23
VPS4A-202ENST00000562754 OTOGQ6ZRI0 2925 aa13.63□□□□□ -0.23
VPS4A-202ENST00000562754 KIR2DS1A0A191URI9 304 aa13.63□□□□□ -0.23
VPS4A-202ENST00000562754 TRDCB7Z8K6 153 aa13.63□□□□□ -0.23
VPS4A-202ENST00000562754 ORC5O43913 435 aa13.63□□□□□ -0.23
VPS4A-202ENST00000562754 HBZP02008 142 aa13.63□□□□□ -0.23
VPS4A-202ENST00000562754 SCTP09683 121 aa13.63□□□□□ -0.23
VPS4A-202ENST00000562754 ZNF16P17020 682 aaPredicted RBP13.63□□□□□ -0.23
VPS4A-202ENST00000562754 RCVRNP35243 200 aa13.63□□□□□ -0.23
VPS4A-202ENST00000562754 GZMKP49863 264 aa13.63□□□□□ -0.23
VPS4A-202ENST00000562754 ERVFRD-1P60508 538 aa13.63□□□□□ -0.23
VPS4A-202ENST00000562754 ZNF846Q147U1 533 aa13.63□□□□□ -0.23
VPS4A-202ENST00000562754 BAK1Q16611 211 aa13.63□□□□□ -0.23
VPS4A-202ENST00000562754 SRSF7Q16629 238 aaKnown RBP eCLIP13.63□□□□□ -0.23
VPS4A-202ENST00000562754 PRAMEF5Q5TYX0 476 aa13.63□□□□□ -0.23
VPS4A-202ENST00000562754 TRAT1Q6PIZ9 186 aa13.63□□□□□ -0.23
VPS4A-202ENST00000562754 C11orf42Q8N5U0 333 aa13.63□□□□□ -0.23
VPS4A-202ENST00000562754 ZNF565Q8N9K5 539 aa13.63□□□□□ -0.23
VPS4A-202ENST00000562754 BEST4Q8NFU0 473 aa13.63□□□□□ -0.23
VPS4A-202ENST00000562754 RFESDQ8TAC1 157 aa13.63□□□□□ -0.23
VPS4A-202ENST00000562754 ARL11Q969Q4 196 aa13.63□□□□□ -0.23
VPS4A-202ENST00000562754 TSC22D3Q99576 134 aa13.63□□□□□ -0.23
VPS4A-202ENST00000562754 LINC00574Q9H8X3 128 aa13.63□□□□□ -0.23
VPS4A-202ENST00000562754 ZNF286AQ9HBT8 521 aa13.63□□□□□ -0.23
VPS4A-202ENST00000562754 ONECUT1Q9UBC0 465 aa13.63□□□□□ -0.23
VPS4A-202ENST00000562754 OPN4Q9UHM6 478 aa13.63□□□□□ -0.23
VPS4A-202ENST00000562754 INSIG2Q9Y5U4 225 aa13.63□□□□□ -0.23
VPS4A-202ENST00000562754 ACANP16112 2415 aa13.62□□□□□ -0.23
VPS4A-202ENST00000562754 IGKV1-6A0A0C4DH72 117 aa13.62□□□□□ -0.23
VPS4A-202ENST00000562754 KBTBD11-OT1A0A1B0GTJ5 212 aa13.62□□□□□ -0.23
VPS4A-202ENST00000562754 C17orf98A8MV24 154 aa13.62□□□□□ -0.23
VPS4A-202ENST00000562754 NPIPB11E5RHQ5 1161 aa13.62□□□□□ -0.23
VPS4A-202ENST00000562754 FABP7O15540 132 aa13.62□□□□□ -0.23
VPS4A-202ENST00000562754 MMP23AO75900 390 aa13.62□□□□□ -0.23
VPS4A-202ENST00000562754 GSTT2P0CG29 244 aa13.62□□□□□ -0.23
VPS4A-202ENST00000562754 GSTT2BP0CG30 244 aa13.62□□□□□ -0.23
VPS4A-202ENST00000562754 GZMHP20718 246 aa13.62□□□□□ -0.23
VPS4A-202ENST00000562754 OMGP23515 440 aa13.62□□□□□ -0.23
VPS4A-202ENST00000562754 KRTAP1-1Q07627 177 aa13.62□□□□□ -0.23
VPS4A-202ENST00000562754 HERPUD1Q15011 391 aa13.62□□□□□ -0.23
VPS4A-202ENST00000562754 ZNF554Q86TJ5 538 aa13.62□□□□□ -0.23
VPS4A-202ENST00000562754 KIR3DL3Q8N743 410 aa13.62□□□□□ -0.23
VPS4A-202ENST00000562754 Q8N7P7 452 aa13.62□□□□□ -0.23
VPS4A-202ENST00000562754 TMEM186Q96B77 213 aa13.62□□□□□ -0.23
VPS4A-202ENST00000562754 THAP7Q9BT49 309 aaPredicted RBP13.62□□□□□ -0.23
VPS4A-202ENST00000562754 GAL3ST2Q9H3Q3 398 aa13.62□□□□□ -0.23
VPS4A-202ENST00000562754 KCNIP1Q9NZI2 227 aa13.62□□□□□ -0.23
VPS4A-202ENST00000562754 MGAT4AQ9UM21 535 aa13.62□□□□□ -0.23
VPS4A-202ENST00000562754 TEX15Q9BXT5 2789 aa13.61□□□□□ -0.23
VPS4A-202ENST00000562754 TRAV20A0A0B4J274 112 aa13.61□□□□□ -0.23
VPS4A-202ENST00000562754 RBBP9O75884 186 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms