RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 ZNF286AQ9HBT8 521 aa7.98□□□□□ -1.13
CLK3-208ENST00000562626 SPACA1Q9HBV2 294 aa7.98□□□□□ -1.13
CLK3-208ENST00000562626 CALYQ9NYX4 217 aa7.98□□□□□ -1.13
CLK3-208ENST00000562626 CDC42EP3Q9UKI2 254 aa7.98□□□□□ -1.13
CLK3-208ENST00000562626 HSF4Q9ULV5 492 aa7.98□□□□□ -1.13
CLK3-208ENST00000562626 SPATA2Q9UM82 520 aa7.98□□□□□ -1.13
CLK3-208ENST00000562626 JMJD1CQ15652 2540 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 IGKV1D-8A0A087WSZ0 117 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 TRGV10A0A0A0MS01 117 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 IGHV3-43A0A0B4J1X8 118 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 IGHV1-69DA0A0B4J2H0 117 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 A0A0U1RQK1 487 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 DPPA5A6NC42 116 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 ZNF729A6NN14 1252 aaPredicted RBP7.97□□□□□ -1.13
CLK3-208ENST00000562626 C12orf77C9JDV5 145 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 NPIPB11E5RHQ5 1161 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 IGHV1-69P01742 117 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 IGHV3-7P01780 117 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 FAM157CP0CG43 387 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 IGHV3-43DP0DP04 118 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 EPHA1P21709 976 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 SRP14P37108 136 aaKnown RBP7.97□□□□□ -1.13
CLK3-208ENST00000562626 MADCAM1Q13477 382 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 LTC4SQ16873 150 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 ZNF880Q6PDB4 577 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 C1orf122Q6ZSJ8 110 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 Q6ZTK2 550 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 DYNAPQ8N1N2 210 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 OR56B1Q8NGI3 324 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 OR1L1Q8NH94 360 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 MAFIPQ8WZ33 124 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 LEAP2Q969E1 77 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 KIRREL1Q96J84 757 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 NEDD4LQ96PU5 975 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 SUCNR1Q9BXA5 334 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 NCOR1P1Q9H4R4 102 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 METTL8Q9H825 291 aaKnown RBP7.97□□□□□ -1.13
CLK3-208ENST00000562626 MBNL3Q9NUK0 354 aaKnown RBP7.97□□□□□ -1.13
CLK3-208ENST00000562626 PLEKHJ1Q9NW61 149 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 TAS2R3Q9NYW6 316 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 ABRACLQ9P1F3 81 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 LPAR3Q9UBY5 353 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 NUP50Q9UKX7 468 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 ETV7Q9Y603 341 aa7.97□□□□□ -1.13
CLK3-208ENST00000562626 FBN1P35555 2871 aaKnown RBP7.96□□□□□ -1.14
CLK3-208ENST00000562626 KBTBD11-OT1A0A1B0GTJ5 212 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 A0A1W2PPE3 182 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 FUOMA2VDF0 154 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 TMEM235A6NFC5 223 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 ODF3BA8MYP8 253 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 SSX5O60225 188 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 HPGDSO60760 199 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 GLAP06280 429 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 HIST1H1DP16402 221 aaKnown RBP7.96□□□□□ -1.14
CLK3-208ENST00000562626 HNF1AP20823 631 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 LOXL3P58215 753 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 RBM39Q14498 530 aaKnown RBP7.96□□□□□ -1.14
CLK3-208ENST00000562626 GNMTQ14749 295 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 DEFB112Q30KQ8 113 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 ZNF260Q3ZCT1 412 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 HEPN1Q6WQI6 88 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 LHFPL4Q7Z7J7 247 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 SAMD12Q8N8I0 201 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 NUDCD2Q8WVJ2 157 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 GCDHQ92947 438 aaPredicted RBP7.96□□□□□ -1.14
CLK3-208ENST00000562626 RAB3CQ96E17 227 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 TMEM133Q9H2Q1 129 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 MIXL1Q9H2W2 232 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 LINC00574Q9H8X3 128 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 ESM1Q9NQ30 184 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 IDI2-AS1Q9NZ38 188 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 OR6C3Q9NZP0 311 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 COMMD3Q9UBI1 195 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 ZNF230Q9UIE0 474 aaPredicted RBP7.96□□□□□ -1.14
CLK3-208ENST00000562626 SESN1Q9Y6P5 492 aa7.96□□□□□ -1.14
CLK3-208ENST00000562626 IGHV2-26A0A0B4J1V2 119 aa7.95□□□□□ -1.14
CLK3-208ENST00000562626 IGKV1-6A0A0C4DH72 117 aa7.95□□□□□ -1.14
CLK3-208ENST00000562626 CTDSP2O14595 271 aa7.95□□□□□ -1.14
CLK3-208ENST00000562626 NPFFO15130 113 aa7.95□□□□□ -1.14
CLK3-208ENST00000562626 SLC31A2O15432 143 aa7.95□□□□□ -1.14
CLK3-208ENST00000562626 HBZP02008 142 aa7.95□□□□□ -1.14
CLK3-208ENST00000562626 RBP4P02753 201 aa7.95□□□□□ -1.14
CLK3-208ENST00000562626 ZNF182P17025 639 aaPredicted RBP7.95□□□□□ -1.14
CLK3-208ENST00000562626 ELK1P19419 428 aa7.95□□□□□ -1.14
CLK3-208ENST00000562626 NFYBP25208 207 aa7.95□□□□□ -1.14
CLK3-208ENST00000562626 SAA4P35542 130 aa7.95□□□□□ -1.14
CLK3-208ENST00000562626 RORCP51449 518 aa7.95□□□□□ -1.14
CLK3-208ENST00000562626 SCAND1P57086 179 aa7.95□□□□□ -1.14
CLK3-208ENST00000562626 GUCA2AQ02747 115 aa7.95□□□□□ -1.14
CLK3-208ENST00000562626 HMGN3Q15651 99 aa7.95□□□□□ -1.14
CLK3-208ENST00000562626 CDNFQ49AH0 187 aa7.95□□□□□ -1.14
CLK3-208ENST00000562626 FBLN7Q53RD9 439 aa7.95□□□□□ -1.14
CLK3-208ENST00000562626 UBE2NLQ5JXB2 153 aa7.95□□□□□ -1.14
CLK3-208ENST00000562626 GPR157Q5UAW9 335 aa7.95□□□□□ -1.14
CLK3-208ENST00000562626 C9orf139Q6ZV77 190 aa7.95□□□□□ -1.14
CLK3-208ENST00000562626 CROCCP3Q8IVE0 287 aa7.95□□□□□ -1.14
CLK3-208ENST00000562626 PRR18Q8N4B5 295 aa7.95□□□□□ -1.14
CLK3-208ENST00000562626 SIGLECL1Q8N7X8 197 aa7.95□□□□□ -1.14
CLK3-208ENST00000562626 SETD6Q8TBK2 473 aa7.95□□□□□ -1.14
CLK3-208ENST00000562626 ARL11Q969Q4 196 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 148.3 ms