RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 GZMHP20718 246 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 SERPINB10P48595 397 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 EFNB2P52799 333 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 PAX5Q02548 391 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 FAM189A2Q15884 450 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 MIDNQ504T8 468 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 C6orf183Q5T699 404 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 BAIAP2L2Q6UXY1 529 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 Q6ZTK2 550 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 ABHD12Q8N2K0 398 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 PRR18Q8N4B5 295 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 ARL11Q969Q4 196 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 ARHGAP5-AS1Q96IT6 56 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 ATG5Q9H1Y0 275 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 ESM1Q9NQ30 184 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 IDI2-AS1Q9NZ38 188 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 KCNIP1Q9NZI2 227 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 FBLN5Q9UBX5 448 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 A0A075B6Q4 140 aa9.32□□□□□ -0.92
CCDC88C-212ENST00000556767 IGHV3-7P01780 117 aa9.32□□□□□ -0.92
CCDC88C-212ENST00000556767 MELTFP08582 738 aa9.32□□□□□ -0.92
CCDC88C-212ENST00000556767 CGB3P0DN86 165 aa9.32□□□□□ -0.92
CCDC88C-212ENST00000556767 CGB7P0DN87 165 aa9.32□□□□□ -0.92
CCDC88C-212ENST00000556767 RAB6AP20340 208 aa9.32□□□□□ -0.92
CCDC88C-212ENST00000556767 CFPP27918 469 aa9.32□□□□□ -0.92
CCDC88C-212ENST00000556767 VBP1P61758 197 aa9.32□□□□□ -0.92
CCDC88C-212ENST00000556767 NCS1P62166 190 aa9.32□□□□□ -0.92
CCDC88C-212ENST00000556767 GPR107Q5VW38 600 aa9.32□□□□□ -0.92
CCDC88C-212ENST00000556767 ZNF626Q68DY1 528 aa9.32□□□□□ -0.92
CCDC88C-212ENST00000556767 Q6YL49 198 aa9.32□□□□□ -0.92
CCDC88C-212ENST00000556767 LHFPL4Q7Z7J7 247 aa9.32□□□□□ -0.92
CCDC88C-212ENST00000556767 RTN4RL2Q86UN3 420 aa9.32□□□□□ -0.92
CCDC88C-212ENST00000556767 FAM89BQ8N5H3 189 aa9.32□□□□□ -0.92
CCDC88C-212ENST00000556767 ZDHHC22Q8N966 263 aa9.32□□□□□ -0.92
CCDC88C-212ENST00000556767 OR11H6Q8NGC7 330 aa9.32□□□□□ -0.92
CCDC88C-212ENST00000556767 NDNFQ8TB73 568 aa9.32□□□□□ -0.92
CCDC88C-212ENST00000556767 LGALS14Q8TCE9 139 aa9.32□□□□□ -0.92
CCDC88C-212ENST00000556767 C17orf50Q8WW18 174 aa9.32□□□□□ -0.92
CCDC88C-212ENST00000556767 TMEM158Q8WZ71 300 aa9.32□□□□□ -0.92
CCDC88C-212ENST00000556767 RAB3CQ96E17 227 aa9.32□□□□□ -0.92
CCDC88C-212ENST00000556767 KIRREL1Q96J84 757 aa9.32□□□□□ -0.92
CCDC88C-212ENST00000556767 PECRQ9BY49 303 aa9.32□□□□□ -0.92
CCDC88C-212ENST00000556767 BTBD17A6NE02 478 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 C12orf77C9JDV5 145 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 NPIPB11E5RHQ5 1161 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 SDCBPO00560 298 aaPredicted RBP9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 SPINT2O43291 252 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 ORC5O43913 435 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 TFAP2AP05549 437 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 RCC1P18754 421 aaPredicted RBP9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 PAX6P26367 422 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 RPS19P39019 145 aaKnown RBP9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 GNG10P50151 68 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 PRRX1P54821 245 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 TMEM50BP56557 158 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 UBA52P62987 128 aaKnown RBP9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 MRPS15P82914 257 aaKnown RBP9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 SLC9A3R2Q15599 337 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 SSX2Q16385 188 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 KRTAP24-1Q3LI83 254 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 MOGAT2Q3SYC2 334 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 PLA1AQ53H76 456 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 TRAT1Q6PIZ9 186 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 CROCCP3Q8IVE0 287 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 OR10R2Q8NGX6 335 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 ZNF596Q8TC21 504 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 MRPL30Q8TCC3 161 aaKnown RBP9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 LEAP2Q969E1 77 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 PHF21AQ96BD5 680 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 NAA50Q9GZZ1 169 aaKnown RBP9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 DPAGT1Q9H3H5 408 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 TAF9BQ9HBM6 251 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 ZNF286AQ9HBT8 521 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 RAB9BQ9NP90 201 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 AK3Q9UIJ7 227 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 HSF4Q9ULV5 492 aa9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 TBL2Q9Y4P3 447 aaKnown RBP9.31□□□□□ -0.92
CCDC88C-212ENST00000556767 IGHV3-43A0A0B4J1X8 118 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 FOXI3A8MTJ6 420 aaPredicted RBP9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 ODF3BA8MYP8 253 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 C15orf65H3BRN8 121 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 IGHV4-59P01825 116 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 CD3GP09693 182 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 IGHV3-43DP0DP04 118 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 HTR1DP28221 377 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 ALDH3B2P48448 385 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 TUSC1Q2TAM9 212 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 KRTAP21-3Q3LHN1 58 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 PLAC9Q5JTB6 97 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 UTF1Q5T230 341 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 LDLRAD3Q86YD5 345 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 ANKRD13BQ86YJ7 626 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 GAPTQ8N292 157 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 BEND2Q8NDZ0 799 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 OR10A7Q8NGE5 316 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 OR5H6Q8NGV6 325 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 OR9G1Q8NH87 305 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 OR1L1Q8NH94 360 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 SSMEM1Q8WWF3 244 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 PTX4Q96A99 478 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms