RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 DYNAPQ8N1N2 210 aa16.67■□□□□ 0.26
CCDC88C-210ENST00000555995 KCNG3Q8TAE7 436 aa16.67■□□□□ 0.26
CCDC88C-210ENST00000555995 TAF15Q92804 592 aaKnown RBP eCLIP16.67■□□□□ 0.26
CCDC88C-210ENST00000555995 YTHDF1Q9BYJ9 559 aaKnown RBP16.67■□□□□ 0.26
CCDC88C-210ENST00000555995 ZNF696Q9H7X3 374 aa16.67■□□□□ 0.26
CCDC88C-210ENST00000555995 ZNF286AQ9HBT8 521 aa16.67■□□□□ 0.26
CCDC88C-210ENST00000555995 FBLN5Q9UBX5 448 aa16.67■□□□□ 0.26
CCDC88C-210ENST00000555995 DENRO43583 198 aaKnown RBP16.66■□□□□ 0.26
CCDC88C-210ENST00000555995 ORC5O43913 435 aa16.66■□□□□ 0.26
CCDC88C-210ENST00000555995 FUT3P21217 361 aa16.66■□□□□ 0.26
CCDC88C-210ENST00000555995 PLA1AQ53H76 456 aa16.66■□□□□ 0.26
CCDC88C-210ENST00000555995 C6orf183Q5T699 404 aa16.66■□□□□ 0.26
CCDC88C-210ENST00000555995 ZNF497Q6ZNH5 498 aa16.66■□□□□ 0.26
CCDC88C-210ENST00000555995 C16orf82Q7Z2V1 217 aa16.66■□□□□ 0.26
CCDC88C-210ENST00000555995 OR2T6Q8NHC8 308 aa16.66■□□□□ 0.26
CCDC88C-210ENST00000555995 TMEM203Q969S6 136 aa16.66■□□□□ 0.26
CCDC88C-210ENST00000555995 AKR1E2Q96JD6 320 aa16.66■□□□□ 0.26
CCDC88C-210ENST00000555995 MMP28Q9H239 520 aa16.66■□□□□ 0.26
CCDC88C-210ENST00000555995 BANF2Q9H503 90 aa16.66■□□□□ 0.26
CCDC88C-210ENST00000555995 ETAA1Q9NY74 926 aa16.66■□□□□ 0.26
CCDC88C-210ENST00000555995 PDCD6O75340 191 aa16.65■□□□□ 0.26
CCDC88C-210ENST00000555995 BPNT1O95861 308 aa16.65■□□□□ 0.26
CCDC88C-210ENST00000555995 GDNFP39905 211 aa16.65■□□□□ 0.26
CCDC88C-210ENST00000555995 MNDAP41218 407 aa16.65■□□□□ 0.26
CCDC88C-210ENST00000555995 KIR2DS4P43632 304 aa16.65■□□□□ 0.26
CCDC88C-210ENST00000555995 MAP2K4P45985 399 aa16.65■□□□□ 0.26
CCDC88C-210ENST00000555995 PSMD7P51665 324 aa16.65■□□□□ 0.26
CCDC88C-210ENST00000555995 GP2P55259 537 aaKnown RBP16.65■□□□□ 0.26
CCDC88C-210ENST00000555995 PROK1P58294 105 aa16.65■□□□□ 0.26
CCDC88C-210ENST00000555995 RPS25P62851 125 aaKnown RBP16.65■□□□□ 0.26
CCDC88C-210ENST00000555995 TMEM104Q8NE00 496 aa16.65■□□□□ 0.26
CCDC88C-210ENST00000555995 OR52M1Q8NGK5 317 aa16.65■□□□□ 0.26
CCDC88C-210ENST00000555995 PIFOQ8TCI5 191 aa16.65■□□□□ 0.26
CCDC88C-210ENST00000555995 FCGR1BQ92637 280 aa16.65■□□□□ 0.26
CCDC88C-210ENST00000555995 TMEM59Q9BXS4 323 aa16.65■□□□□ 0.26
CCDC88C-210ENST00000555995 PEX16Q9Y5Y5 336 aa16.65■□□□□ 0.26
CCDC88C-210ENST00000555995 FAM172BPA6NC97 362 aa16.64■□□□□ 0.25
CCDC88C-210ENST00000555995 A6NDX4 124 aa16.64■□□□□ 0.25
CCDC88C-210ENST00000555995 BUB1B-PAK6H3BSN5 160 aa16.64■□□□□ 0.25
CCDC88C-210ENST00000555995 TIMM23O14925 209 aa16.64■□□□□ 0.25
CCDC88C-210ENST00000555995 SLC22A1O15245 554 aa16.64■□□□□ 0.25
CCDC88C-210ENST00000555995 MPIG6BO95866 241 aa16.64■□□□□ 0.25
CCDC88C-210ENST00000555995 PAX6P26367 422 aa16.64■□□□□ 0.25
CCDC88C-210ENST00000555995 SSTR5P35346 364 aa16.64■□□□□ 0.25
CCDC88C-210ENST00000555995 Q3ZCU0 254 aa16.64■□□□□ 0.25
CCDC88C-210ENST00000555995 PRR31Q5SQ13 230 aa16.64■□□□□ 0.25
CCDC88C-210ENST00000555995 LDLRAD2Q5SZI1 272 aa16.64■□□□□ 0.25
CCDC88C-210ENST00000555995 CAPSLQ8WWF8 208 aa16.64■□□□□ 0.25
CCDC88C-210ENST00000555995 NEDD4LQ96PU5 975 aa16.64■□□□□ 0.25
CCDC88C-210ENST00000555995 CITED1Q99966 193 aa16.64■□□□□ 0.25
CCDC88C-210ENST00000555995 PLGRKTQ9HBL7 147 aa16.64■□□□□ 0.25
CCDC88C-210ENST00000555995 TRAPPC2LQ9UL33 140 aa16.64■□□□□ 0.25
CCDC88C-210ENST00000555995 J3QR06 171 aa16.63■□□□□ 0.25
CCDC88C-210ENST00000555995 SPINT2O43291 252 aa16.63■□□□□ 0.25
CCDC88C-210ENST00000555995 MT-ND4P03905 459 aa16.63■□□□□ 0.25
CCDC88C-210ENST00000555995 CD37P11049 281 aa16.63■□□□□ 0.25
CCDC88C-210ENST00000555995 TPTE2P1Q5T6R2 138 aa16.63■□□□□ 0.25
CCDC88C-210ENST00000555995 TMEM91Q6ZNR0 172 aa16.63■□□□□ 0.25
CCDC88C-210ENST00000555995 OR2W3Q7Z3T1 314 aa16.63■□□□□ 0.25
CCDC88C-210ENST00000555995 ZNF554Q86TJ5 538 aa16.63■□□□□ 0.25
CCDC88C-210ENST00000555995 GAPTQ8N292 157 aa16.63■□□□□ 0.25
CCDC88C-210ENST00000555995 TOMM40LQ969M1 308 aa16.63■□□□□ 0.25
CCDC88C-210ENST00000555995 ARL11Q969Q4 196 aa16.63■□□□□ 0.25
CCDC88C-210ENST00000555995 FAM46BQ96A09 425 aa16.63■□□□□ 0.25
CCDC88C-210ENST00000555995 RPEQ96AT9 228 aa16.63■□□□□ 0.25
CCDC88C-210ENST00000555995 NDUFB11Q9NX14 153 aa16.63■□□□□ 0.25
CCDC88C-210ENST00000555995 ZNF581Q9P0T4 197 aa16.63■□□□□ 0.25
CCDC88C-210ENST00000555995 SLC17A2O00624 439 aa16.62■□□□□ 0.25
CCDC88C-210ENST00000555995 VSIG8P0DPA2 414 aa16.62■□□□□ 0.25
CCDC88C-210ENST00000555995 GALP22466 123 aa16.62■□□□□ 0.25
CCDC88C-210ENST00000555995 CALRP27797 417 aaKnown RBP16.62■□□□□ 0.25
CCDC88C-210ENST00000555995 RPS27AP62979 156 aaKnown RBP16.62■□□□□ 0.25
CCDC88C-210ENST00000555995 MADCAM1Q13477 382 aa16.62■□□□□ 0.25
CCDC88C-210ENST00000555995 BAIAP2L2Q6UXY1 529 aa16.62■□□□□ 0.25
CCDC88C-210ENST00000555995 C8orf31Q8N9H6 132 aa16.62■□□□□ 0.25
CCDC88C-210ENST00000555995 RFESDQ8TAC1 157 aa16.62■□□□□ 0.25
CCDC88C-210ENST00000555995 URM1Q9BTM9 101 aaKnown RBP16.62■□□□□ 0.25
CCDC88C-210ENST00000555995 RRP15Q9Y3B9 282 aaKnown RBP16.62■□□□□ 0.25
CCDC88C-210ENST00000555995 M0QZ24 198 aa16.61■□□□□ 0.25
CCDC88C-210ENST00000555995 PDCD5O14737 125 aa16.61■□□□□ 0.25
CCDC88C-210ENST00000555995 CHST1O43916 411 aa16.61■□□□□ 0.25
CCDC88C-210ENST00000555995 IL3RAP26951 378 aa16.61■□□□□ 0.25
CCDC88C-210ENST00000555995 RAB7AP51149 207 aa16.61■□□□□ 0.25
CCDC88C-210ENST00000555995 FABP5Q01469 135 aa16.61■□□□□ 0.25
CCDC88C-210ENST00000555995 EMX1Q04741 257 aaPredicted RBP16.61■□□□□ 0.25
CCDC88C-210ENST00000555995 OR10X1Q8NGY0 326 aa16.61■□□□□ 0.25
CCDC88C-210ENST00000555995 TM2D1Q9BX74 207 aa16.61■□□□□ 0.25
CCDC88C-210ENST00000555995 PRSS22Q9GZN4 317 aa16.61■□□□□ 0.25
CCDC88C-210ENST00000555995 KCNIP1Q9NZI2 227 aa16.61■□□□□ 0.25
CCDC88C-210ENST00000555995 PSG11Q9UQ72 335 aa16.61■□□□□ 0.25
CCDC88C-210ENST00000555995 LRRC42Q9Y546 428 aa16.61■□□□□ 0.25
CCDC88C-210ENST00000555995 C15orf65H3BRN8 121 aa16.6■□□□□ 0.25
CCDC88C-210ENST00000555995 CCRL2O00421 344 aa16.6■□□□□ 0.25
CCDC88C-210ENST00000555995 SDCBPO00560 298 aaPredicted RBP16.6■□□□□ 0.25
CCDC88C-210ENST00000555995 ARSBP15848 533 aa16.6■□□□□ 0.25
CCDC88C-210ENST00000555995 MYL9P24844 172 aa16.6■□□□□ 0.25
CCDC88C-210ENST00000555995 RAB13P51153 203 aa16.6■□□□□ 0.25
CCDC88C-210ENST00000555995 RAB11BQ15907 218 aa16.6■□□□□ 0.25
CCDC88C-210ENST00000555995 LTC4SQ16873 150 aa16.6■□□□□ 0.25
CCDC88C-210ENST00000555995 SYT6Q5T7P8 510 aaPredicted RBP16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms