RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 COMMD9Q9P000 198 aa1.36□□□□□ -2.19
SCFD1-217ENST00000555953 TBL2Q9Y4P3 447 aaKnown RBP1.36□□□□□ -2.19
SCFD1-217ENST00000555953 ZNF407Q9C0G0 2248 aa1.36□□□□□ -2.19
SCFD1-217ENST00000555953 MAP3K19Q56UN5 1328 aa1.36□□□□□ -2.19
SCFD1-217ENST00000555953 PLXNB1O43157 2135 aa1.36□□□□□ -2.19
SCFD1-217ENST00000555953 PTPRKQ15262 1439 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 A0A1B0GU33 70 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 C8orf87E5RJ46 101 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 POLR3GO15318 223 aaPredicted RBP1.35□□□□□ -2.19
SCFD1-217ENST00000555953 AQP9O43315 295 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 SYNGR1O43759 233 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 SCN2BO60939 215 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 LIMS3P0CW19 117 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 LIMS4P0CW20 117 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 CTLA4P16410 223 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 ZNF708P17019 499 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 ATF1P18846 271 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 CASQ1P31415 396 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 KRTAP25-1Q3LHN0 102 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 LGALSLQ3ZCW2 172 aaPredicted RBP1.35□□□□□ -2.19
SCFD1-217ENST00000555953 RBM48Q5RL73 367 aaKnown RBP1.35□□□□□ -2.19
SCFD1-217ENST00000555953 ELP2Q6IA86 826 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 TMPPEQ6ZT21 453 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 SPATA24Q86W54 205 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 SELENOHQ8IZQ5 122 aaKnown RBP1.35□□□□□ -2.19
SCFD1-217ENST00000555953 Q8NAQ8 132 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 GATD1Q8NB37 220 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 LY6G5BQ8NDX9 201 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 ANGPTL6Q8NI99 470 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 OR5P3Q8WZ94 311 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 CCDC127Q96BQ5 260 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 SLC25A44Q96H78 314 aaPredicted RBP1.35□□□□□ -2.19
SCFD1-217ENST00000555953 REEP6Q96HR9 211 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 IGF2BP2-AS1Q96M15 143 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 UGT2B28Q9BY64 529 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 CFAP45Q9UL16 551 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 URGCP-MRPS24S4R325 110 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 LTBP2Q14767 1821 aa1.35□□□□□ -2.19
SCFD1-217ENST00000555953 IGKV1D-37A0A075B6S9 117 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 EFCAB9A8MZ26 197 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 MKRN2OSH3BPM6 223 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 GPR171O14626 319 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 CDS2O95674 445 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 S100A2P29034 98 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 EVI2BP34910 448 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 RCVRNP35243 200 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 TNFRSF9Q07011 255 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 SKP2Q13309 424 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 CLEC6AQ6EIG7 209 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 SMARCD3Q6STE5 483 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 KRTCAP2Q8N6L1 136 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 OR5AK3PQ8NH89 298 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 SPPL2BQ8TCT7 592 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 PDCD6IPQ8WUM4 868 aaKnown RBP1.34□□□□□ -2.19
SCFD1-217ENST00000555953 KCTD4Q8WVF5 259 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 LRRC45Q96CN5 670 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 PRSS27Q9BQR3 290 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 BCL2L14Q9BZR8 327 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 ALX4Q9H161 411 aaPredicted RBP1.34□□□□□ -2.19
SCFD1-217ENST00000555953 OR51E2Q9H255 320 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 CHMP4BQ9H444 224 aaKnown RBP1.34□□□□□ -2.19
SCFD1-217ENST00000555953 ASCL3Q9NQ33 180 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 SCML1Q9UN30 329 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 BTRCQ9Y297 605 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 LINC00588Q9Y4M8 146 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 GMEB1Q9Y692 573 aa1.34□□□□□ -2.19
SCFD1-217ENST00000555953 PIK3R4Q99570 1358 aa1.34□□□□□ -2.2
SCFD1-217ENST00000555953 CHD2O14647 1828 aaKnown RBP1.33□□□□□ -2.2
SCFD1-217ENST00000555953 PCNX2A6NKB5 2137 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 IGLV10-54A0A075B6I4 117 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 IGHV3OR15-7A0A075B7D8 119 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 TMEM213A2RRL7 107 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 A6NED7 52 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 ARGFXA6NJG6 315 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 C9J4A7 227 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 CYTH3O43739 400 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 RAB36O95755 333 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 EPPINO95925 133 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 LTAP01374 205 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 GUSBP08236 651 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 KDELR2P33947 212 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 CD151P48509 253 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 MP68P56378 58 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 FAM3AP98173 230 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 EXOC3L4Q17RC7 722 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 LAIR2Q6ISS4 152 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 FAM19A3Q7Z5A8 133 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 NIT1Q86X76 327 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 CRLF3Q8IUI8 442 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 OR11G2Q8NGC1 345 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 OR4A5Q8NH83 315 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 MUC7Q8TAX7 377 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 DYNC2LI1Q8TCX1 351 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 RNASEH2CQ8TDP1 164 aaKnown RBP1.33□□□□□ -2.2
SCFD1-217ENST00000555953 CCDC12Q8WUD4 166 aaPredicted RBP1.33□□□□□ -2.2
SCFD1-217ENST00000555953 ZNF251Q9BRH9 671 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 MED10Q9BTT4 135 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 HIGD2AQ9BW72 106 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 DMAC2Q9NW81 257 aa1.33□□□□□ -2.2
SCFD1-217ENST00000555953 C1orf109Q9NX04 203 aa1.33□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms