RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 SERPINE3A8MV23 424 aa10.13□□□□□ -0.79
LINC00643-202ENST00000553426 GEMIN2O14893 280 aaKnown RBP10.13□□□□□ -0.79
LINC00643-202ENST00000553426 WBP4O75554 376 aaKnown RBP10.13□□□□□ -0.79
LINC00643-202ENST00000553426 IGKV1D-33P01593 117 aa10.13□□□□□ -0.79
LINC00643-202ENST00000553426 IGKV1-33P01594 117 aa10.13□□□□□ -0.79
LINC00643-202ENST00000553426 GAPDHP04406 335 aaKnown RBP10.13□□□□□ -0.79
LINC00643-202ENST00000553426 SMN1Q16637 294 aaKnown RBP10.13□□□□□ -0.79
LINC00643-202ENST00000553426 Q499Y3 187 aa10.13□□□□□ -0.79
LINC00643-202ENST00000553426 SLC22A6Q4U2R8 563 aa10.13□□□□□ -0.79
LINC00643-202ENST00000553426 YIF1BQ5BJH7 314 aa10.13□□□□□ -0.79
LINC00643-202ENST00000553426 UTF1Q5T230 341 aa10.13□□□□□ -0.79
LINC00643-202ENST00000553426 OR2G6Q5TZ20 316 aa10.13□□□□□ -0.79
LINC00643-202ENST00000553426 TTC23Q5W5X9 447 aa10.13□□□□□ -0.79
LINC00643-202ENST00000553426 XAF1Q6GPH4 301 aa10.13□□□□□ -0.79
LINC00643-202ENST00000553426 MOB3BQ86TA1 216 aa10.13□□□□□ -0.79
LINC00643-202ENST00000553426 FOXRED2Q8IWF2 684 aa10.13□□□□□ -0.79
LINC00643-202ENST00000553426 OR52M1Q8NGK5 317 aa10.13□□□□□ -0.79
LINC00643-202ENST00000553426 CYGBQ8WWM9 190 aa10.13□□□□□ -0.79
LINC00643-202ENST00000553426 DPF1Q92782 380 aa10.13□□□□□ -0.79
LINC00643-202ENST00000553426 ARL11Q969Q4 196 aa10.13□□□□□ -0.79
LINC00643-202ENST00000553426 TMEM80Q96HE8 168 aa10.13□□□□□ -0.79
LINC00643-202ENST00000553426 SPACA1Q9HBV2 294 aa10.13□□□□□ -0.79
LINC00643-202ENST00000553426 DIMT1Q9UNQ2 313 aaKnown RBP10.13□□□□□ -0.79
LINC00643-202ENST00000553426 A0A1W2PPI3 338 aa10.12□□□□□ -0.79
LINC00643-202ENST00000553426 CCRL2O00421 344 aa10.12□□□□□ -0.79
LINC00643-202ENST00000553426 SDCBPO00560 298 aaPredicted RBP10.12□□□□□ -0.79
LINC00643-202ENST00000553426 HSD17B6O14756 317 aa10.12□□□□□ -0.79
LINC00643-202ENST00000553426 OGG1O15527 345 aa10.12□□□□□ -0.79
LINC00643-202ENST00000553426 MPIG6BO95866 241 aa10.12□□□□□ -0.79
LINC00643-202ENST00000553426 SLC6A1P30531 599 aa10.12□□□□□ -0.79
LINC00643-202ENST00000553426 ZNF816Q0VGE8 651 aaPredicted RBP10.12□□□□□ -0.79
LINC00643-202ENST00000553426 SLC35E3Q7Z769 313 aa10.12□□□□□ -0.79
LINC00643-202ENST00000553426 ZNF329Q86UD4 541 aa10.12□□□□□ -0.79
LINC00643-202ENST00000553426 COMMD1Q8N668 190 aa10.12□□□□□ -0.79
LINC00643-202ENST00000553426 C5orf56Q8N8D9 126 aa10.12□□□□□ -0.79
LINC00643-202ENST00000553426 CCDC107Q8WV48 283 aa10.12□□□□□ -0.79
LINC00643-202ENST00000553426 GHSRQ92847 366 aa10.12□□□□□ -0.79
LINC00643-202ENST00000553426 ZNF184Q99676 751 aaPredicted RBP10.12□□□□□ -0.79
LINC00643-202ENST00000553426 C8orf4Q9NR00 106 aa10.12□□□□□ -0.79
LINC00643-202ENST00000553426 ZFP57Q9NU63 452 aa10.12□□□□□ -0.79
LINC00643-202ENST00000553426 DNAH3Q8TD57 4116 aa10.12□□□□□ -0.79
LINC00643-202ENST00000553426 TRAV39A0A0B4J263 110 aa10.11□□□□□ -0.79
LINC00643-202ENST00000553426 IGHV1-3A0A0C4DH29 117 aa10.11□□□□□ -0.79
LINC00643-202ENST00000553426 A0A1W2PPE3 182 aa10.11□□□□□ -0.79
LINC00643-202ENST00000553426 NCBP2LA6PVI3 153 aaKnown RBP10.11□□□□□ -0.79
LINC00643-202ENST00000553426 NUDT19A8MXV4 375 aa10.11□□□□□ -0.79
LINC00643-202ENST00000553426 MCRIP1C9JLW8 97 aa10.11□□□□□ -0.79
LINC00643-202ENST00000553426 AIPO00170 330 aa10.11□□□□□ -0.79
LINC00643-202ENST00000553426 SPINT2O43291 252 aa10.11□□□□□ -0.79
LINC00643-202ENST00000553426 ORC5O43913 435 aa10.11□□□□□ -0.79
LINC00643-202ENST00000553426 TAS2R43P59537 309 aa10.11□□□□□ -0.79
LINC00643-202ENST00000553426 Q3ZCU0 254 aa10.11□□□□□ -0.79
LINC00643-202ENST00000553426 C10orf99Q6UWK7 81 aa10.11□□□□□ -0.79
LINC00643-202ENST00000553426 JAGN1Q8N5M9 183 aa10.11□□□□□ -0.79
LINC00643-202ENST00000553426 C8orf31Q8N9H6 132 aa10.11□□□□□ -0.79
LINC00643-202ENST00000553426 OR2T10Q8NGZ9 312 aa10.11□□□□□ -0.79
LINC00643-202ENST00000553426 MRPS24Q96EL2 167 aaKnown RBP10.11□□□□□ -0.79
LINC00643-202ENST00000553426 MCRIP2Q9BUT9 160 aaKnown RBP10.11□□□□□ -0.79
LINC00643-202ENST00000553426 GON7Q9BXV9 100 aa10.11□□□□□ -0.79
LINC00643-202ENST00000553426 TRBV5-5A0A0J9YX44 114 aa10.1□□□□□ -0.79
LINC00643-202ENST00000553426 TXNL1O43396 289 aa10.1□□□□□ -0.79
LINC00643-202ENST00000553426 GPX5O75715 221 aa10.1□□□□□ -0.79
LINC00643-202ENST00000553426 REG1BP48304 166 aa10.1□□□□□ -0.79
LINC00643-202ENST00000553426 RPL23AP62750 156 aaKnown RBP10.1□□□□□ -0.79
LINC00643-202ENST00000553426 DIAPH2-AS1Q14236 149 aa10.1□□□□□ -0.79
LINC00643-202ENST00000553426 LRRC36Q1X8D7 754 aa10.1□□□□□ -0.79
LINC00643-202ENST00000553426 TMEM30BQ3MIR4 351 aa10.1□□□□□ -0.79
LINC00643-202ENST00000553426 C6orf183Q5T699 404 aa10.1□□□□□ -0.79
LINC00643-202ENST00000553426 DMKNQ6E0U4 476 aaPredicted RBP10.1□□□□□ -0.79
LINC00643-202ENST00000553426 AWAT2Q6E213 333 aa10.1□□□□□ -0.79
LINC00643-202ENST00000553426 DHRSXQ8N5I4 330 aa10.1□□□□□ -0.79
LINC00643-202ENST00000553426 LINC00311Q8N616 119 aa10.1□□□□□ -0.79
LINC00643-202ENST00000553426 PACRGLQ8N7B6 248 aa10.1□□□□□ -0.79
LINC00643-202ENST00000553426 THRSPQ92748 146 aa10.1□□□□□ -0.79
LINC00643-202ENST00000553426 ORAI1Q96D31 301 aa10.1□□□□□ -0.79
LINC00643-202ENST00000553426 NOL4LQ96MY1 436 aaPredicted RBP10.1□□□□□ -0.79
LINC00643-202ENST00000553426 GFOD1Q9NXC2 390 aa10.1□□□□□ -0.79
LINC00643-202ENST00000553426 GNG12Q9UBI6 72 aa10.1□□□□□ -0.79
LINC00643-202ENST00000553426 ZMAT5Q9UDW3 170 aaKnown RBP10.1□□□□□ -0.79
LINC00643-202ENST00000553426 CLEC2DQ9UHP7 191 aa10.1□□□□□ -0.79
LINC00643-202ENST00000553426 TRAPPC2LQ9UL33 140 aa10.1□□□□□ -0.79
LINC00643-202ENST00000553426 MRPS28Q9Y2Q9 187 aaKnown RBP10.1□□□□□ -0.79
LINC00643-202ENST00000553426 SIRT4Q9Y6E7 314 aaPredicted RBP10.1□□□□□ -0.79
LINC00643-202ENST00000553426 EFCAB10A6NFE3 127 aa10.09□□□□□ -0.79
LINC00643-202ENST00000553426 C15orf65H3BRN8 121 aa10.09□□□□□ -0.79
LINC00643-202ENST00000553426 AP4M1O00189 453 aa10.09□□□□□ -0.79
LINC00643-202ENST00000553426 IGHG2P01859 326 aa10.09□□□□□ -0.79
LINC00643-202ENST00000553426 MT-ND4P03905 459 aa10.09□□□□□ -0.79
LINC00643-202ENST00000553426 IGFBP3P17936 291 aaPredicted RBP10.09□□□□□ -0.79
LINC00643-202ENST00000553426 ST3GAL4Q11206 333 aa10.09□□□□□ -0.79
LINC00643-202ENST00000553426 EBI3Q14213 229 aa10.09□□□□□ -0.79
LINC00643-202ENST00000553426 DEFB121Q5J5C9 76 aa10.09□□□□□ -0.79
LINC00643-202ENST00000553426 TEX38Q6PEX7 206 aa10.09□□□□□ -0.79
LINC00643-202ENST00000553426 TRAT1Q6PIZ9 186 aa10.09□□□□□ -0.79
LINC00643-202ENST00000553426 GLIPR1L1Q6UWM5 242 aa10.09□□□□□ -0.79
LINC00643-202ENST00000553426 ZNF497Q6ZNH5 498 aa10.09□□□□□ -0.79
LINC00643-202ENST00000553426 TGIF2LXQ8IUE1 241 aa10.09□□□□□ -0.79
LINC00643-202ENST00000553426 CDH26Q8IXH8 852 aa10.09□□□□□ -0.79
LINC00643-202ENST00000553426 IZUMO1Q8IYV9 350 aa10.09□□□□□ -0.79
LINC00643-202ENST00000553426 STPG2Q8N412 459 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms