RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 HBMQ6B0K9 141 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 THOC7Q6I9Y2 204 aaKnown RBP2.79□□□□□ -1.96
LIMA1-208ENST00000551691 ZNF497Q6ZNH5 498 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 MRPL55Q7Z7F7 128 aaKnown RBP2.79□□□□□ -1.96
LIMA1-208ENST00000551691 MARCH3Q86UD3 253 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 P2RY8Q86VZ1 359 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 LRP11Q86VZ4 500 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 RBM45Q8IUH3 476 aaKnown RBP2.79□□□□□ -1.96
LIMA1-208ENST00000551691 CPNE9Q8IYJ1 553 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 TEX29Q8N6K0 151 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 MNS1Q8NEH6 495 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 ATP6V1C2Q8NEY4 427 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 OR52E4Q8NGH9 312 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 OR2V1Q8NHB1 315 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 EEF1AKMT1Q8WVE0 214 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 APH1BQ8WW43 257 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 ARPC1AQ92747 370 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 MYDGFQ969H8 173 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 QKIQ96PU8 341 aaKnown RBP eCLIP2.79□□□□□ -1.96
LIMA1-208ENST00000551691 VAT1Q99536 393 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 ARHGDIGQ99819 225 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 SH3GL3Q99963 347 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 PCBD2Q9H0N5 130 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 RPF2Q9H7B2 306 aaKnown RBP2.79□□□□□ -1.96
LIMA1-208ENST00000551691 CXorf21Q9HAI6 301 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 TREM1Q9NP99 234 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 MCTS1Q9ULC4 181 aaKnown RBP2.79□□□□□ -1.96
LIMA1-208ENST00000551691 SLC22A14Q9Y267 594 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 CACNG2Q9Y698 323 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 CDH10Q9Y6N8 788 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 DNAH2Q9P225 4427 aa2.79□□□□□ -1.96
LIMA1-208ENST00000551691 MRPS12O15235 138 aaKnown RBP2.78□□□□□ -1.96
LIMA1-208ENST00000551691 RAD51CO43502 376 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 RP2O75695 350 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 MPC1LP0DKB6 136 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 RPS3P23396 243 aaKnown RBP eCLIP2.78□□□□□ -1.96
LIMA1-208ENST00000551691 F2RP25116 425 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 TTPAP49638 278 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 TMEM33P57088 247 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 PRPS1P60891 318 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 TFDP2Q14188 446 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 Q1RN00 199 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 TRMT12Q53H54 448 aaKnown RBP2.78□□□□□ -1.96
LIMA1-208ENST00000551691 COA6Q5JTJ3 125 aaKnown RBP2.78□□□□□ -1.96
LIMA1-208ENST00000551691 RNLSQ5VYX0 342 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 RNF165Q6ZSG1 346 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 MYPOPQ86VE0 399 aaPredicted RBP2.78□□□□□ -1.96
LIMA1-208ENST00000551691 THOC6Q86W42 341 aaKnown RBP2.78□□□□□ -1.96
LIMA1-208ENST00000551691 VKORC1L1Q8N0U8 176 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 CBR4Q8N4T8 237 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 GATSQ8NAP1 163 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 KLHL30-AS1Q8NEE0 82 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 OR2L5Q8NG80 312 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 OR4D6Q8NGJ1 314 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 OR52E2Q8NGJ4 325 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 OR10R2Q8NGX6 335 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 NDNFQ8TB73 568 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 OR51E1Q8TCB6 317 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 GTSF1Q8WW33 167 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 RDH5Q92781 318 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 RAB8BQ92930 207 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 TMEM54Q969K7 222 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 CCDC124Q96CT7 223 aaKnown RBP2.78□□□□□ -1.96
LIMA1-208ENST00000551691 GPR21Q99679 349 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 AIF1LQ9BQI0 150 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 HINT2Q9BX68 163 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 C20orf85Q9H1P6 137 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 TMEM38AQ9H6F2 299 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 DYNLRB1Q9NP97 96 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 CTPS2Q9NRF8 586 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 ABCB10Q9NRK6 738 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 UBAP1Q9NZ09 502 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 FAT2Q9NYQ8 4349 aa2.78□□□□□ -1.96
LIMA1-208ENST00000551691 DNAH17Q9UFH2 4485 aa2.77□□□□□ -1.97
LIMA1-208ENST00000551691 SRRM2Q9UQ35 2752 aaKnown RBP2.77□□□□□ -1.97
LIMA1-208ENST00000551691 A0A087X0T9 212 aa2.77□□□□□ -1.97
LIMA1-208ENST00000551691 TRIM49D1C9J1S8 452 aa2.77□□□□□ -1.97
LIMA1-208ENST00000551691 E5RI56 91 aa2.77□□□□□ -1.97
LIMA1-208ENST00000551691 XKRYO14609 159 aa2.77□□□□□ -1.97
LIMA1-208ENST00000551691 NUPL2O15504 423 aaKnown RBP2.77□□□□□ -1.97
LIMA1-208ENST00000551691 VAPBO95292 243 aa2.77□□□□□ -1.97
LIMA1-208ENST00000551691 FAM228BP0C875 321 aa2.77□□□□□ -1.97
LIMA1-208ENST00000551691 CT45A6P0DMU7 189 aa2.77□□□□□ -1.97
LIMA1-208ENST00000551691 CT45A5P0DMU8 189 aa2.77□□□□□ -1.97
LIMA1-208ENST00000551691 CT45A7P0DMV0 189 aa2.77□□□□□ -1.97
LIMA1-208ENST00000551691 C1GALT1C1LP0DN25 315 aa2.77□□□□□ -1.97
LIMA1-208ENST00000551691 CD28P10747 220 aa2.77□□□□□ -1.97
LIMA1-208ENST00000551691 AQP2P41181 271 aa2.77□□□□□ -1.97
LIMA1-208ENST00000551691 TPM4P67936 248 aa2.77□□□□□ -1.97
LIMA1-208ENST00000551691 AQP6Q13520 282 aa2.77□□□□□ -1.97
LIMA1-208ENST00000551691 HERPUD1Q15011 391 aa2.77□□□□□ -1.97
LIMA1-208ENST00000551691 VAMP3Q15836 100 aa2.77□□□□□ -1.97
LIMA1-208ENST00000551691 ZNF239Q16600 458 aaKnown RBP2.77□□□□□ -1.97
LIMA1-208ENST00000551691 ZSCAN26Q16670 478 aa2.77□□□□□ -1.97
LIMA1-208ENST00000551691 KRT71Q3SY84 523 aa2.77□□□□□ -1.97
LIMA1-208ENST00000551691 HSP90B2PQ58FF3 399 aa2.77□□□□□ -1.97
LIMA1-208ENST00000551691 LRRC10Q5BKY1 277 aa2.77□□□□□ -1.97
LIMA1-208ENST00000551691 CT45A1Q5HYN5 189 aa2.77□□□□□ -1.97
LIMA1-208ENST00000551691 PAGE3Q5JUK9 113 aa2.77□□□□□ -1.97
LIMA1-208ENST00000551691 DUPD1Q68J44 220 aa2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms