RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 BPIFB6Q8NFQ5 453 aa2.03□□□□□ -2.08
VPS29-205ENST00000548539 OR11G2Q8NGC1 345 aa2.03□□□□□ -2.08
VPS29-205ENST00000548539 MUC7Q8TAX7 377 aa2.03□□□□□ -2.08
VPS29-205ENST00000548539 SPPL2BQ8TCT7 592 aa2.03□□□□□ -2.08
VPS29-205ENST00000548539 APOBEC3DQ96AK3 386 aaPredicted RBP2.03□□□□□ -2.08
VPS29-205ENST00000548539 LRRC45Q96CN5 670 aa2.03□□□□□ -2.08
VPS29-205ENST00000548539 SLC25A44Q96H78 314 aaPredicted RBP2.03□□□□□ -2.08
VPS29-205ENST00000548539 PYURFQ96I23 114 aa2.03□□□□□ -2.08
VPS29-205ENST00000548539 TRIB3Q96RU7 358 aa2.03□□□□□ -2.08
VPS29-205ENST00000548539 COMMD9Q9P000 198 aa2.03□□□□□ -2.08
VPS29-205ENST00000548539 NAGKQ9UJ70 344 aa2.03□□□□□ -2.08
VPS29-205ENST00000548539 SVILO95425 2214 aa2.02□□□□□ -2.09
VPS29-205ENST00000548539 KIAA0232Q92628 1395 aa2.02□□□□□ -2.09
VPS29-205ENST00000548539 MAP3K19Q56UN5 1328 aa2.02□□□□□ -2.09
VPS29-205ENST00000548539 IGKV1D-37A0A075B6S9 117 aa2.02□□□□□ -2.09
VPS29-205ENST00000548539 F8VZ95 297 aa2.02□□□□□ -2.09
VPS29-205ENST00000548539 TMEM250H0YL14 139 aa2.02□□□□□ -2.09
VPS29-205ENST00000548539 TOR1AO14656 332 aa2.02□□□□□ -2.09
VPS29-205ENST00000548539 GYPCP04921 128 aa2.02□□□□□ -2.09
VPS29-205ENST00000548539 SULT1A2P50226 295 aa2.02□□□□□ -2.09
VPS29-205ENST00000548539 DEFA6Q01524 100 aa2.02□□□□□ -2.09
VPS29-205ENST00000548539 DHRS2Q13268 280 aa2.02□□□□□ -2.09
VPS29-205ENST00000548539 TAF9Q16594 264 aa2.02□□□□□ -2.09
VPS29-205ENST00000548539 LYPD6Q86Y78 171 aa2.02□□□□□ -2.09
VPS29-205ENST00000548539 KRTCAP2Q8N6L1 136 aa2.02□□□□□ -2.09
VPS29-205ENST00000548539 ZNRF2Q8NHG8 242 aa2.02□□□□□ -2.09
VPS29-205ENST00000548539 KCTD4Q8WVF5 259 aa2.02□□□□□ -2.09
VPS29-205ENST00000548539 CMBLQ96DG6 245 aa2.02□□□□□ -2.09
VPS29-205ENST00000548539 TRNT1Q96Q11 434 aaKnown RBP2.02□□□□□ -2.09
VPS29-205ENST00000548539 HBEGFQ99075 208 aa2.02□□□□□ -2.09
VPS29-205ENST00000548539 C1orf109Q9NX04 203 aa2.02□□□□□ -2.09
VPS29-205ENST00000548539 PHLDA3Q9Y5J5 127 aa2.02□□□□□ -2.09
VPS29-205ENST00000548539 RAB3GAP2Q9H2M9 1393 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 ZBED9Q6R2W3 1325 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 C9J4A7 227 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 K7EQS6 105 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 EEF1E1O43324 174 aaKnown RBP2.01□□□□□ -2.09
VPS29-205ENST00000548539 SYNGR2O43760 224 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 ADAP1O75689 374 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 DLX6P56179 175 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 SKP2Q13309 424 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 ZCWPW2Q504Y3 356 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 HES3Q5TGS1 186 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 LYZL2Q7Z4W2 148 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 RPRMLQ8N4K4 120 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 C3orf22Q8N5N4 141 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 OR5D18Q8NGL1 313 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 OR4P4Q8NGL7 312 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 OR9I1Q8NGQ6 314 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 OR5AK3PQ8NH89 298 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 CMTM2Q8TAZ6 248 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 DTD1Q8TEA8 209 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 OR5P3Q8WZ94 311 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 PPWD1Q96BP3 646 aaKnown RBP2.01□□□□□ -2.09
VPS29-205ENST00000548539 PKMYT1Q99640 499 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 B9D2Q9BPU9 175 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 ZNF251Q9BRH9 671 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 UPF3BQ9BZI7 483 aaKnown RBP2.01□□□□□ -2.09
VPS29-205ENST00000548539 ARL6Q9H0F7 186 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 ALX4Q9H161 411 aaPredicted RBP2.01□□□□□ -2.09
VPS29-205ENST00000548539 SLC23A2Q9UGH3 650 aa2.01□□□□□ -2.09
VPS29-205ENST00000548539 CYTH3O43739 400 aa2□□□□□ -2.09
VPS29-205ENST00000548539 CALUO43852 315 aaPredicted RBP2□□□□□ -2.09
VPS29-205ENST00000548539 SH2D1AO60880 128 aa2□□□□□ -2.09
VPS29-205ENST00000548539 PET100P0DJ07 73 aa2□□□□□ -2.09
VPS29-205ENST00000548539 ADORA1P30542 326 aa2□□□□□ -2.09
VPS29-205ENST00000548539 GRPRP30550 384 aa2□□□□□ -2.09
VPS29-205ENST00000548539 GABRA3P34903 492 aa2□□□□□ -2.09
VPS29-205ENST00000548539 SKP1P63208 163 aa2□□□□□ -2.09
VPS29-205ENST00000548539 TSPAN31Q12999 210 aa2□□□□□ -2.09
VPS29-205ENST00000548539 APOFQ13790 326 aa2□□□□□ -2.09
VPS29-205ENST00000548539 MMDQ15546 238 aa2□□□□□ -2.09
VPS29-205ENST00000548539 CENPWQ5EE01 88 aa2□□□□□ -2.09
VPS29-205ENST00000548539 TIMM23BQ5SRD1 257 aa2□□□□□ -2.09
VPS29-205ENST00000548539 NIPAL1Q6NVV3 410 aa2□□□□□ -2.09
VPS29-205ENST00000548539 TTC33Q6PID6 262 aaPredicted RBP2□□□□□ -2.09
VPS29-205ENST00000548539 SPNS3Q6ZMD2 512 aa2□□□□□ -2.09
VPS29-205ENST00000548539 LRP11Q86VZ4 500 aa2□□□□□ -2.09
VPS29-205ENST00000548539 DOLPP1Q86YN1 238 aa2□□□□□ -2.09
VPS29-205ENST00000548539 MSRB3Q8IXL7 192 aa2□□□□□ -2.09
VPS29-205ENST00000548539 HS3ST5Q8IZT8 346 aa2□□□□□ -2.09
VPS29-205ENST00000548539 BLIDQ8IZY5 108 aa2□□□□□ -2.09
VPS29-205ENST00000548539 LY6G5BQ8NDX9 201 aa2□□□□□ -2.09
VPS29-205ENST00000548539 CHST5Q9GZS9 411 aa2□□□□□ -2.09
VPS29-205ENST00000548539 RPUSD1Q9UJJ7 312 aaKnown RBP2□□□□□ -2.09
VPS29-205ENST00000548539 SEC16AO15027 2179 aa2□□□□□ -2.09
VPS29-205ENST00000548539 PIK3R4Q99570 1358 aa1.99□□□□□ -2.09
VPS29-205ENST00000548539 TRBV24-1A0A075B6N3 115 aa1.99□□□□□ -2.09
VPS29-205ENST00000548539 B4DEV8 164 aa1.99□□□□□ -2.09
VPS29-205ENST00000548539 F5H5K5 113 aa1.99□□□□□ -2.09
VPS29-205ENST00000548539 UGT2B11O75310 529 aa1.99□□□□□ -2.09
VPS29-205ENST00000548539 ATP6V1G2O95670 118 aa1.99□□□□□ -2.09
VPS29-205ENST00000548539 LTAP01374 205 aa1.99□□□□□ -2.09
VPS29-205ENST00000548539 OR12D1P0DN82 309 aa1.99□□□□□ -2.09
VPS29-205ENST00000548539 PSMA1P25786 263 aaKnown RBP1.99□□□□□ -2.09
VPS29-205ENST00000548539 INPP1P49441 399 aa1.99□□□□□ -2.09
VPS29-205ENST00000548539 STC1P52823 247 aa1.99□□□□□ -2.09
VPS29-205ENST00000548539 GABARAPL2P60520 117 aa1.99□□□□□ -2.09
VPS29-205ENST00000548539 C1QTNF8P60827 252 aa1.99□□□□□ -2.09
VPS29-205ENST00000548539 PAFAH1B3Q15102 231 aaKnown RBP1.99□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms