RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 OR9I1Q8NGQ6 314 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 OR1L6Q8NGR2 347 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 OR52E5Q8NH55 327 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 GNPDA2Q8TDQ7 276 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 C15orf40Q8WUR7 153 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 TFB1MQ8WVM0 346 aaKnown RBP2.5□□□□□ -2.01
USP28-210ENST00000542033 TNFAIP8L1Q8WVP5 186 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 ITLN1Q8WWA0 313 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 RERGQ96A58 199 aaPredicted RBP2.5□□□□□ -2.01
USP28-210ENST00000542033 C10orf35Q96D05 121 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 GALNT14Q96FL9 552 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 TEX37Q96LM6 180 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 PKMYT1Q99640 499 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 SIGMAR1Q99720 223 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 MIEN1Q9BRT3 115 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 NIPSNAP3BQ9BS92 247 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 FAAP24Q9BTP7 215 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 C20orf24Q9BUV8 137 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 ULBP2Q9BZM5 246 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 OR2J1Q9GZK6 312 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 ZBP1Q9H171 429 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 PRO1933Q9H354 126 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 C1orf198Q9H425 327 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 HEBP1Q9NRV9 189 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 NECAP2Q9NVZ3 263 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 MARCH5Q9NX47 278 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 SIGLEC8Q9NYZ4 499 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 ZNF581Q9P0T4 197 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 COMMD3Q9UBI1 195 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 CD84Q9UIB8 345 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 ZNF230Q9UIE0 474 aaPredicted RBP2.5□□□□□ -2.01
USP28-210ENST00000542033 RAB22AQ9UL26 194 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 SCML2Q9UQR0 700 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 MEMO1Q9Y316 297 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 AK6Q9Y3D8 172 aaKnown RBP2.5□□□□□ -2.01
USP28-210ENST00000542033 ORC6Q9Y5N6 252 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 KPTNQ9Y664 436 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 V9GYH0 126 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 SLIT1O75093 1534 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 ANKRD36CQ5JPF3 1778 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 MRC1P22897 1456 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 USP54Q70EL1 1684 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 TNS3Q68CZ2 1445 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 ALKQ9UM73 1620 aa2.5□□□□□ -2.01
USP28-210ENST00000542033 NRKQ7Z2Y5 1582 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 PCNX3Q9H6A9 2034 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 ZNF638Q14966 1978 aaKnown RBP2.49□□□□□ -2.01
USP28-210ENST00000542033 IGHV2OR16-5A0A0B4J2B6 119 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 A0A0D9SG52 128 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 A0A1W2PPE3 182 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 ANKRD20A5PA0PJZ0 165 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 ZNF840PA6NDX5 716 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 TVP23AA6NH52 213 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 KRTAP9-6A8MVA2 160 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 HIDE1A8MVS5 230 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 MCRIP1C9JLW8 97 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 G3V3Q6 166 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 M0QXV9 152 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 SLC31A1O15431 190 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 PLA2G10O15496 165 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 RS1O15537 224 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 RBFOX2O43251 390 aaKnown RBP eCLIP2.49□□□□□ -2.01
USP28-210ENST00000542033 SLC37A4O43826 429 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 OR7C2O60412 319 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 SCELO95171 688 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 GJB5O95377 273 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 UTS2O95399 124 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 SEMA4FO95754 770 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 RAB36O95755 333 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 ACTL6AO96019 429 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 SERPINE1P05121 402 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 ISG15P05161 165 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 SERPINE2P07093 398 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 GZMBP10144 247 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 ZNF35P13682 527 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 MGMTP16455 207 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 BCL3P20749 454 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 FUT3P21217 361 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 USF1P22415 310 aaPredicted RBP2.49□□□□□ -2.01
USP28-210ENST00000542033 GDF1P27539 372 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 AGTR1P30556 359 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 S100A7P31151 101 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 MDH2P40926 338 aaKnown RBP2.49□□□□□ -2.01
USP28-210ENST00000542033 DUSP3P51452 185 aaPredicted RBP2.49□□□□□ -2.01
USP28-210ENST00000542033 ATP1B3P54709 279 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 TCTAP57738 103 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 SLC35A2P78381 396 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 HOXC5Q00444 222 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 CDK5Q00535 292 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 RUNX1Q01196 453 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 FABP5Q01469 135 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 TCP10Q12799 353 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 PRDX4Q13162 271 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 ZNF79Q15937 498 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 C17orf58Q2M2W7 97 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 ARHGAP11BQ3KRB8 267 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 SLC25A52Q3SY17 297 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 TP53I3Q53FA7 332 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 TFDP3Q5H9I0 405 aa2.49□□□□□ -2.01
USP28-210ENST00000542033 COA6Q5JTJ3 125 aaKnown RBP2.49□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms