RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 MMP28Q9H239 520 aa11.4□□□□□ -0.58
USP28-209ENST00000540925 BANF2Q9H503 90 aa11.4□□□□□ -0.58
USP28-209ENST00000540925 ZNF702PQ9H963 129 aa11.4□□□□□ -0.58
USP28-209ENST00000540925 TCF7L1Q9HCS4 588 aa11.4□□□□□ -0.58
USP28-209ENST00000540925 SIGLEC9Q9Y336 463 aa11.4□□□□□ -0.58
USP28-209ENST00000540925 LEUTXA8MZ59 168 aa11.39□□□□□ -0.59
USP28-209ENST00000540925 J3QR06 171 aa11.39□□□□□ -0.59
USP28-209ENST00000540925 SLC22A1O15245 554 aa11.39□□□□□ -0.59
USP28-209ENST00000540925 GLAP06280 429 aa11.39□□□□□ -0.59
USP28-209ENST00000540925 UBBP0CG47 229 aa11.39□□□□□ -0.59
USP28-209ENST00000540925 GZMHP20718 246 aa11.39□□□□□ -0.59
USP28-209ENST00000540925 GABRA5P31644 462 aa11.39□□□□□ -0.59
USP28-209ENST00000540925 LOXL3P58215 753 aa11.39□□□□□ -0.59
USP28-209ENST00000540925 TRAM1Q15629 374 aa11.39□□□□□ -0.59
USP28-209ENST00000540925 HSD17B12Q53GQ0 312 aa11.39□□□□□ -0.59
USP28-209ENST00000540925 ATAD3CQ5T2N8 411 aa11.39□□□□□ -0.59
USP28-209ENST00000540925 TPTE2P1Q5T6R2 138 aa11.39□□□□□ -0.59
USP28-209ENST00000540925 TMEM219Q86XT9 240 aa11.39□□□□□ -0.59
USP28-209ENST00000540925 OR4C13Q8NGP0 309 aa11.39□□□□□ -0.59
USP28-209ENST00000540925 RFESDQ8TAC1 157 aa11.39□□□□□ -0.59
USP28-209ENST00000540925 WIPF2Q8TF74 440 aaPredicted RBP11.39□□□□□ -0.59
USP28-209ENST00000540925 TMEM203Q969S6 136 aa11.39□□□□□ -0.59
USP28-209ENST00000540925 CREB3L1Q96BA8 519 aa11.39□□□□□ -0.59
USP28-209ENST00000540925 MGLLQ99685 303 aa11.39□□□□□ -0.59
USP28-209ENST00000540925 SELENOIQ9C0D9 397 aa11.39□□□□□ -0.59
USP28-209ENST00000540925 NPFFR1Q9GZQ6 430 aa11.39□□□□□ -0.59
USP28-209ENST00000540925 ABCB10Q9NRK6 738 aa11.39□□□□□ -0.59
USP28-209ENST00000540925 PITPNC1Q9UKF7 332 aa11.39□□□□□ -0.59
USP28-209ENST00000540925 PSG11Q9UQ72 335 aa11.39□□□□□ -0.59
USP28-209ENST00000540925 OOSP1A8MZH6 123 aa11.38□□□□□ -0.59
USP28-209ENST00000540925 F2RL2O00254 374 aa11.38□□□□□ -0.59
USP28-209ENST00000540925 DENRO43583 198 aaKnown RBP11.38□□□□□ -0.59
USP28-209ENST00000540925 ORC5O43913 435 aa11.38□□□□□ -0.59
USP28-209ENST00000540925 CRTAPO75718 401 aaPredicted RBP11.38□□□□□ -0.59
USP28-209ENST00000540925 VSIG8P0DPA2 414 aa11.38□□□□□ -0.59
USP28-209ENST00000540925 NFYBP25208 207 aa11.38□□□□□ -0.59
USP28-209ENST00000540925 PSMA1P25786 263 aaKnown RBP11.38□□□□□ -0.59
USP28-209ENST00000540925 PRRX1P54821 245 aa11.38□□□□□ -0.59
USP28-209ENST00000540925 GABARAPL2P60520 117 aa11.38□□□□□ -0.59
USP28-209ENST00000540925 UNC119Q13432 240 aa11.38□□□□□ -0.59
USP28-209ENST00000540925 SSX1Q16384 188 aa11.38□□□□□ -0.59
USP28-209ENST00000540925 GLT8D1Q68CQ7 371 aa11.38□□□□□ -0.59
USP28-209ENST00000540925 RAB12Q6IQ22 244 aa11.38□□□□□ -0.59
USP28-209ENST00000540925 C11orf88Q6PI97 169 aa11.38□□□□□ -0.59
USP28-209ENST00000540925 OR52M1Q8NGK5 317 aa11.38□□□□□ -0.59
USP28-209ENST00000540925 CCDC90BQ9GZT6 254 aa11.38□□□□□ -0.59
USP28-209ENST00000540925 ACOT13Q9NPJ3 140 aa11.38□□□□□ -0.59
USP28-209ENST00000540925 SERTAD4Q9NUC0 356 aa11.38□□□□□ -0.59
USP28-209ENST00000540925 BLOC1S6Q9UL45 172 aa11.38□□□□□ -0.59
USP28-209ENST00000540925 WNK1Q9H4A3 2382 aa11.37□□□□□ -0.59
USP28-209ENST00000540925 FAM90A9PA6NNJ1 464 aa11.37□□□□□ -0.59
USP28-209ENST00000540925 TMEM14DPA8MWL7 114 aa11.37□□□□□ -0.59
USP28-209ENST00000540925 MCRIP1C9JLW8 97 aa11.37□□□□□ -0.59
USP28-209ENST00000540925 TOR1AO14656 332 aa11.37□□□□□ -0.59
USP28-209ENST00000540925 MRPS14O60783 128 aaKnown RBP11.37□□□□□ -0.59
USP28-209ENST00000540925 PDCD6O75340 191 aa11.37□□□□□ -0.59
USP28-209ENST00000540925 CA11O75493 328 aa11.37□□□□□ -0.59
USP28-209ENST00000540925 HSMCR30P0CW71 290 aa11.37□□□□□ -0.59
USP28-209ENST00000540925 FUT3P21217 361 aa11.37□□□□□ -0.59
USP28-209ENST00000540925 CHATP28329 748 aa11.37□□□□□ -0.59
USP28-209ENST00000540925 CEACAM3P40198 252 aa11.37□□□□□ -0.59
USP28-209ENST00000540925 RPS27AP62979 156 aaKnown RBP11.37□□□□□ -0.59
USP28-209ENST00000540925 FABP5Q01469 135 aa11.37□□□□□ -0.59
USP28-209ENST00000540925 EMX1Q04741 257 aaPredicted RBP11.37□□□□□ -0.59
USP28-209ENST00000540925 RBM39Q14498 530 aaKnown RBP11.37□□□□□ -0.59
USP28-209ENST00000540925 OR10K2Q6IF99 312 aa11.37□□□□□ -0.59
USP28-209ENST00000540925 CD200R1LQ6Q8B3 271 aa11.37□□□□□ -0.59
USP28-209ENST00000540925 ZNF367Q7RTV3 350 aa11.37□□□□□ -0.59
USP28-209ENST00000540925 C8orf31Q8N9H6 132 aa11.37□□□□□ -0.59
USP28-209ENST00000540925 CFHR4Q92496 578 aa11.37□□□□□ -0.59
USP28-209ENST00000540925 LEAP2Q969E1 77 aa11.37□□□□□ -0.59
USP28-209ENST00000540925 FAM46BQ96A09 425 aa11.37□□□□□ -0.59
USP28-209ENST00000540925 TM2D1Q9BX74 207 aa11.37□□□□□ -0.59
USP28-209ENST00000540925 CST11Q9H112 138 aa11.37□□□□□ -0.59
USP28-209ENST00000540925 MBNL3Q9NUK0 354 aaKnown RBP11.37□□□□□ -0.59
USP28-209ENST00000540925 PEX16Q9Y5Y5 336 aa11.37□□□□□ -0.59
USP28-209ENST00000540925 A0A1W2PPI3 338 aa11.36□□□□□ -0.59
USP28-209ENST00000540925 C12orf77C9JDV5 145 aa11.36□□□□□ -0.59
USP28-209ENST00000540925 AIPO00170 330 aa11.36□□□□□ -0.59
USP28-209ENST00000540925 KCNAB3O43448 404 aa11.36□□□□□ -0.59
USP28-209ENST00000540925 HTR2CP28335 458 aa11.36□□□□□ -0.59
USP28-209ENST00000540925 Q3ZCU0 254 aa11.36□□□□□ -0.59
USP28-209ENST00000540925 SYT6Q5T7P8 510 aaPredicted RBP11.36□□□□□ -0.59
USP28-209ENST00000540925 TREML4Q6UXN2 200 aa11.36□□□□□ -0.59
USP28-209ENST00000540925 Q6ZS46 218 aa11.36□□□□□ -0.59
USP28-209ENST00000540925 C16orf82Q7Z2V1 217 aa11.36□□□□□ -0.59
USP28-209ENST00000540925 LINC00311Q8N616 119 aa11.36□□□□□ -0.59
USP28-209ENST00000540925 OR6M1Q8NGM8 313 aa11.36□□□□□ -0.59
USP28-209ENST00000540925 OR2T6Q8NHC8 308 aa11.36□□□□□ -0.59
USP28-209ENST00000540925 CCDC107Q8WV48 283 aa11.36□□□□□ -0.59
USP28-209ENST00000540925 KCNK15Q9H427 330 aa11.36□□□□□ -0.59
USP28-209ENST00000540925 LIN7BQ9HAP6 207 aa11.36□□□□□ -0.59
USP28-209ENST00000540925 NDUFB11Q9NX14 153 aa11.36□□□□□ -0.59
USP28-209ENST00000540925 ETAA1Q9NY74 926 aa11.36□□□□□ -0.59
USP28-209ENST00000540925 A0A0A6YYD4 124 aa11.35□□□□□ -0.59
USP28-209ENST00000540925 FOXI3A8MTJ6 420 aaPredicted RBP11.35□□□□□ -0.59
USP28-209ENST00000540925 H3BUI4 141 aa11.35□□□□□ -0.59
USP28-209ENST00000540925 SLC17A2O00624 439 aa11.35□□□□□ -0.59
USP28-209ENST00000540925 ARL6IP5O75915 188 aa11.35□□□□□ -0.59
USP28-209ENST00000540925 BPNT1O95861 308 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms