RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 HS3ST5Q8IZT8 346 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 CDRT4Q8N9R6 151 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 OR4P4Q8NGL7 312 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 OR2Y1Q8NGV0 311 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 OR4A5Q8NH83 315 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 OR2AE1Q8NHA4 323 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 GPR119Q8TDV5 335 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 SERPINB11Q96P15 392 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 OR8B2Q96RD0 313 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 EBPLQ9BY08 206 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 POTEKPQ9BYX7 375 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 TREM1Q9NP99 234 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 POFUT2Q9Y2G5 429 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 CARHSP1Q9Y2V2 147 aaKnown RBP1.32□□□□□ -2.2
CD44-238ENST00000534296 SNX24Q9Y343 169 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 WASHC3Q9Y3C0 194 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 U3KQK5 164 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 USP42Q9H9J4 1324 aaKnown RBP1.32□□□□□ -2.2
CD44-238ENST00000534296 CHD8Q9HCK8 2581 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 NOS1P29475 1434 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 ZNF462Q96JM2 2506 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 MYO15BQ96JP2 1530 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 A8MWP4 228 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 HSBP1L1C9JCN9 74 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 M0QX08 132 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 CDIPTO14735 213 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 SLC25A20O43772 301 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 NEMFO60524 1076 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 SHOX2O60902 331 aaPredicted RBP1.31□□□□□ -2.2
CD44-238ENST00000534296 CDK14O94921 469 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 PET100P0DJ07 73 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 GABRA1P14867 456 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 GZMHP20718 246 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 TSPOP30536 169 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 INPP1P49441 399 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 PLTPP55058 493 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 AQP5P55064 265 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 GTF2BQ00403 316 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 EXOC3L4Q17RC7 722 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 SPIN4Q56A73 249 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 OR10J3Q5JRS4 329 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 FAM162BQ5T6X4 162 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 SMARCD3Q6STE5 483 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 COPS6Q7L5N1 327 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 TCF24Q7RTU0 167 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 C17orf78Q8N4C9 275 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 OR5K1Q8NHB7 308 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 MUC7Q8TAX7 377 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 GALMQ96C23 342 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 SMIM12Q96EX1 92 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 STACQ99469 402 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 MAT2BQ9NZL9 334 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 TMEM216Q9P0N5 145 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 GLS2Q9UI32 602 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 MRM2Q9UI43 246 aaKnown RBP1.31□□□□□ -2.2
CD44-238ENST00000534296 ALG5Q9Y673 324 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 URGCP-MRPS24S4R325 110 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 ATG2BQ96BY7 2078 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 ZSWIM8A7E2V4 1837 aa1.31□□□□□ -2.2
CD44-238ENST00000534296 NUP153P49790 1475 aaKnown RBP1.31□□□□□ -2.2
CD44-238ENST00000534296 IGLV10-54A0A075B6I4 117 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 IQCF5A8MTL0 148 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 F8VZ95 297 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 G3V3Q6 166 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 DENRO43583 198 aaKnown RBP1.3□□□□□ -2.2
CD44-238ENST00000534296 OPN1SWP03999 348 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 NQO1P15559 274 aaKnown RBP1.3□□□□□ -2.2
CD44-238ENST00000534296 COL8A2P25067 703 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 PPP1CCP36873 323 aaKnown RBP1.3□□□□□ -2.2
CD44-238ENST00000534296 DHRS2Q13268 280 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 SKP2Q13309 424 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 CASP8Q14790 479 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 PDK2Q15119 407 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 DNAL1Q4LDG9 190 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 RBM48Q5RL73 367 aaKnown RBP1.3□□□□□ -2.2
CD44-238ENST00000534296 Q6ZT83 130 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 MSRB3Q8IXL7 192 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 OR11G2Q8NGC1 345 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 OR5AK3PQ8NH89 298 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 ATP6V1G3Q96LB4 118 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 OR2D2Q9H210 308 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 TUBA4BQ9H853 241 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 SLC23A2Q9UGH3 650 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 ENPP5Q9UJA9 477 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 RPUSD1Q9UJJ7 312 aaKnown RBP1.3□□□□□ -2.2
CD44-238ENST00000534296 VPREB3Q9UKI3 123 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 FBXL3Q9UKT7 428 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 SCML1Q9UN30 329 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 PHLDA3Q9Y5J5 127 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 CUL9Q8IWT3 2517 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 SHROOM3Q8TF72 1996 aa1.3□□□□□ -2.2
CD44-238ENST00000534296 A8MWP6 167 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 UGT2B11O75310 529 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 CPMP14384 443 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 GADD45AP24522 165 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 KDELR2P33947 212 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 DYNLL1P63167 89 aaKnown RBP1.29□□□□□ -2.2
CD44-238ENST00000534296 XRCC4Q13426 336 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 APOFQ13790 326 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 CLEC12BQ2HXU8 276 aa1.29□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms