RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 DHDHQ9UQ10 334 aa18.45■□□□□ 0.54
CPSF1-202ENST00000527827 SEC14L6B5MCN3 397 aa18.44■□□□□ 0.54
CPSF1-202ENST00000527827 C15orf65H3BRN8 121 aa18.44■□□□□ 0.54
CPSF1-202ENST00000527827 MPZL2O60487 215 aa18.44■□□□□ 0.54
CPSF1-202ENST00000527827 ELANEP08246 267 aa18.44■□□□□ 0.54
CPSF1-202ENST00000527827 CFHR3Q02985 330 aa18.44■□□□□ 0.54
CPSF1-202ENST00000527827 FAM53AQ6NSI3 398 aaPredicted RBP18.44■□□□□ 0.54
CPSF1-202ENST00000527827 SATL1Q86VE3 508 aa18.44■□□□□ 0.54
CPSF1-202ENST00000527827 LINC00311Q8N616 119 aa18.44■□□□□ 0.54
CPSF1-202ENST00000527827 OR5AK2Q8NH90 309 aa18.44■□□□□ 0.54
CPSF1-202ENST00000527827 ST6GALNAC6Q969X2 333 aa18.44■□□□□ 0.54
CPSF1-202ENST00000527827 GPER1Q99527 375 aa18.44■□□□□ 0.54
CPSF1-202ENST00000527827 FAM118AQ9NWS6 357 aa18.44■□□□□ 0.54
CPSF1-202ENST00000527827 TMEM212A6NML5 194 aa18.43■□□□□ 0.54
CPSF1-202ENST00000527827 C3orf84H3BNL1 204 aa18.43■□□□□ 0.54
CPSF1-202ENST00000527827 HTR3BO95264 441 aa18.43■□□□□ 0.54
CPSF1-202ENST00000527827 RPSAP08865 295 aaKnown RBP18.43■□□□□ 0.54
CPSF1-202ENST00000527827 RAB3AP20336 220 aa18.43■□□□□ 0.54
CPSF1-202ENST00000527827 GZMHP20718 246 aa18.43■□□□□ 0.54
CPSF1-202ENST00000527827 RSU1Q15404 277 aa18.43■□□□□ 0.54
CPSF1-202ENST00000527827 C1orf146Q5VVC0 180 aa18.43■□□□□ 0.54
CPSF1-202ENST00000527827 OR52M1Q8NGK5 317 aa18.43■□□□□ 0.54
CPSF1-202ENST00000527827 TSEN15Q8WW01 171 aaKnown RBP18.43■□□□□ 0.54
CPSF1-202ENST00000527827 CPNE2Q96FN4 548 aaPredicted RBP18.43■□□□□ 0.54
CPSF1-202ENST00000527827 MRPL48Q96GC5 212 aaKnown RBP18.43■□□□□ 0.54
CPSF1-202ENST00000527827 HSPB9Q9BQS6 159 aa18.43■□□□□ 0.54
CPSF1-202ENST00000527827 IFT22Q9H7X7 185 aa18.43■□□□□ 0.54
CPSF1-202ENST00000527827 ZNF736B4DX44 427 aaPredicted RBP18.42■□□□□ 0.54
CPSF1-202ENST00000527827 ALPLP05186 524 aa18.42■□□□□ 0.54
CPSF1-202ENST00000527827 CD1BP29016 333 aa18.42■□□□□ 0.54
CPSF1-202ENST00000527827 FHL3Q13643 280 aa18.42■□□□□ 0.54
CPSF1-202ENST00000527827 C8orf31Q8N9H6 132 aa18.42■□□□□ 0.54
CPSF1-202ENST00000527827 UBALD1Q8TB05 177 aa18.42■□□□□ 0.54
CPSF1-202ENST00000527827 RTN4IP1Q8WWV3 396 aaPredicted RBP18.42■□□□□ 0.54
CPSF1-202ENST00000527827 ARL11Q969Q4 196 aa18.42■□□□□ 0.54
CPSF1-202ENST00000527827 RBMXL1Q96E39 390 aaKnown RBP18.42■□□□□ 0.54
CPSF1-202ENST00000527827 S1PR3Q99500 378 aa18.42■□□□□ 0.54
CPSF1-202ENST00000527827 FAM192AQ9GZU8 254 aa18.42■□□□□ 0.54
CPSF1-202ENST00000527827 ST3GAL6Q9Y274 331 aa18.42■□□□□ 0.54
CPSF1-202ENST00000527827 SDCBPO00560 298 aaPredicted RBP18.41■□□□□ 0.54
CPSF1-202ENST00000527827 CDRT1O95170 752 aa18.41■□□□□ 0.54
CPSF1-202ENST00000527827 MOSP00540 346 aa18.41■□□□□ 0.54
CPSF1-202ENST00000527827 IGHG4P01861 327 aa18.41■□□□□ 0.54
CPSF1-202ENST00000527827 C4orf3Q8WVX3 66 aa18.41■□□□□ 0.54
CPSF1-202ENST00000527827 RGP1Q92546 391 aaPredicted RBP18.41■□□□□ 0.54
CPSF1-202ENST00000527827 RASL11BQ9BPW5 248 aa18.41■□□□□ 0.54
CPSF1-202ENST00000527827 GFOD1Q9NXC2 390 aa18.41■□□□□ 0.54
CPSF1-202ENST00000527827 TAS2R4Q9NYW5 299 aa18.41■□□□□ 0.54
CPSF1-202ENST00000527827 SORL1Q92673 2214 aa18.41■□□□□ 0.54
CPSF1-202ENST00000527827 HUWE1Q7Z6Z7 4374 aaKnown RBP18.4■□□□□ 0.54
CPSF1-202ENST00000527827 IGHV3-43A0A0B4J1X8 118 aa18.4■□□□□ 0.54
CPSF1-202ENST00000527827 TMEM30CPA0ZSE6 113 aa18.4■□□□□ 0.54
CPSF1-202ENST00000527827 MAGEB3O15480 346 aa18.4■□□□□ 0.54
CPSF1-202ENST00000527827 RRP9O43818 475 aaKnown RBP18.4■□□□□ 0.54
CPSF1-202ENST00000527827 IGHV3-43DP0DP04 118 aa18.4■□□□□ 0.54
CPSF1-202ENST00000527827 GABRB1P18505 474 aa18.4■□□□□ 0.54
CPSF1-202ENST00000527827 RBM11P57052 281 aaKnown RBP18.4■□□□□ 0.54
CPSF1-202ENST00000527827 ZIK1Q3SY52 487 aaPredicted RBP18.4■□□□□ 0.54
CPSF1-202ENST00000527827 NHLRC3Q5JS37 347 aa18.4■□□□□ 0.54
CPSF1-202ENST00000527827 FAM71E2Q8N5Q1 922 aa18.4■□□□□ 0.54
CPSF1-202ENST00000527827 JAM3Q9BX67 310 aa18.4■□□□□ 0.54
CPSF1-202ENST00000527827 ERVK13-1Q9NX77 482 aa18.4■□□□□ 0.54
CPSF1-202ENST00000527827 ZNF256Q9Y2P7 627 aaPredicted RBP18.4■□□□□ 0.54
CPSF1-202ENST00000527827 SIRT4Q9Y6E7 314 aaPredicted RBP18.4■□□□□ 0.54
CPSF1-202ENST00000527827 SNTNA6NMZ2 147 aa18.39■□□□□ 0.53
CPSF1-202ENST00000527827 OR7C1O76099 320 aaPredicted RBP18.39■□□□□ 0.53
CPSF1-202ENST00000527827 PSMB8P28062 276 aa18.39■□□□□ 0.53
CPSF1-202ENST00000527827 CHATP28329 748 aa18.39■□□□□ 0.53
CPSF1-202ENST00000527827 SOX2P48431 317 aa18.39■□□□□ 0.53
CPSF1-202ENST00000527827 F2RL1P55085 397 aa18.39■□□□□ 0.53
CPSF1-202ENST00000527827 ZNF260Q3ZCT1 412 aa18.39■□□□□ 0.53
CPSF1-202ENST00000527827 CCDC107Q8WV48 283 aa18.39■□□□□ 0.53
CPSF1-202ENST00000527827 MYCBPQ99417 103 aaPredicted RBP18.39■□□□□ 0.53
CPSF1-202ENST00000527827 IL36GQ9NZH8 169 aa18.39■□□□□ 0.53
CPSF1-202ENST00000527827 DYNC2H1Q8NCM8 4307 aaKnown RBP18.39■□□□□ 0.53
CPSF1-202ENST00000527827 GEMIN2O14893 280 aaKnown RBP18.38■□□□□ 0.53
CPSF1-202ENST00000527827 SLC31A2O15432 143 aa18.38■□□□□ 0.53
CPSF1-202ENST00000527827 ORC5O43913 435 aa18.38■□□□□ 0.53
CPSF1-202ENST00000527827 VDAC1P21796 283 aa18.38■□□□□ 0.53
CPSF1-202ENST00000527827 IL3RAP26951 378 aa18.38■□□□□ 0.53
CPSF1-202ENST00000527827 MRPL28Q13084 256 aaKnown RBP18.38■□□□□ 0.53
CPSF1-202ENST00000527827 OR8H1Q8NGG4 311 aa18.38■□□□□ 0.53
CPSF1-202ENST00000527827 OR52N1Q8NH53 320 aa18.38■□□□□ 0.53
CPSF1-202ENST00000527827 MYOZ3Q8TDC0 251 aa18.38■□□□□ 0.53
CPSF1-202ENST00000527827 ZNF580Q9UK33 172 aa18.38■□□□□ 0.53
CPSF1-202ENST00000527827 ING4Q9UNL4 249 aa18.38■□□□□ 0.53
CPSF1-202ENST00000527827 ORC6Q9Y5N6 252 aa18.38■□□□□ 0.53
CPSF1-202ENST00000527827 EI24O14681 340 aa18.37■□□□□ 0.53
CPSF1-202ENST00000527827 IGF1P05019 195 aa18.37■□□□□ 0.53
CPSF1-202ENST00000527827 SOX6P35712 828 aa18.37■□□□□ 0.53
CPSF1-202ENST00000527827 VHLP40337 213 aa18.37■□□□□ 0.53
CPSF1-202ENST00000527827 GTF2A1P52655 376 aaPredicted RBP18.37■□□□□ 0.53
CPSF1-202ENST00000527827 GBX2P52951 348 aaPredicted RBP18.37■□□□□ 0.53
CPSF1-202ENST00000527827 Q3ZCU0 254 aa18.37■□□□□ 0.53
CPSF1-202ENST00000527827 KLHL22Q53GT1 634 aa18.37■□□□□ 0.53
CPSF1-202ENST00000527827 ZNF439Q8NDP4 499 aa18.37■□□□□ 0.53
CPSF1-202ENST00000527827 OR11H1Q8NG94 326 aa18.37■□□□□ 0.53
CPSF1-202ENST00000527827 KCTD7Q96MP8 289 aa18.37■□□□□ 0.53
CPSF1-202ENST00000527827 METTL9Q9H1A3 318 aa18.37■□□□□ 0.53
CPSF1-202ENST00000527827 AMBNQ9NP70 447 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms