RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 DLL3Q9NYJ7 618 aa18.1■□□□□ 0.49
VPS28-205ENST00000526204 LRP5LA4QPB2 252 aa18.09■□□□□ 0.49
VPS28-205ENST00000526204 DEGS1O15121 323 aa18.09■□□□□ 0.49
VPS28-205ENST00000526204 SLC25A6P12236 298 aa18.09■□□□□ 0.49
VPS28-205ENST00000526204 CA6P23280 308 aa18.09■□□□□ 0.49
VPS28-205ENST00000526204 ATP6V0CP27449 155 aa18.09■□□□□ 0.49
VPS28-205ENST00000526204 ASCL1P50553 236 aa18.09■□□□□ 0.49
VPS28-205ENST00000526204 PLA2G2CQ5R387 149 aa18.09■□□□□ 0.49
VPS28-205ENST00000526204 H1FOOQ8IZA3 346 aaPredicted RBP18.09■□□□□ 0.49
VPS28-205ENST00000526204 IL22RA1Q8N6P7 574 aa18.09■□□□□ 0.49
VPS28-205ENST00000526204 GNPNAT1Q96EK6 184 aaPredicted RBP18.09■□□□□ 0.49
VPS28-205ENST00000526204 RPS10P5Q9NQ39 176 aa18.09■□□□□ 0.49
VPS28-205ENST00000526204 TREM2Q9NZC2 230 aa18.09■□□□□ 0.49
VPS28-205ENST00000526204 WRBO00258 174 aa18.08■□□□□ 0.49
VPS28-205ENST00000526204 WNT2P09544 360 aa18.08■□□□□ 0.49
VPS28-205ENST00000526204 OMGP23515 440 aa18.08■□□□□ 0.49
VPS28-205ENST00000526204 MDH2P40926 338 aaKnown RBP18.08■□□□□ 0.49
VPS28-205ENST00000526204 OR2T2Q6IF00 324 aa18.08■□□□□ 0.49
VPS28-205ENST00000526204 MDP1Q86V88 176 aa18.08■□□□□ 0.49
VPS28-205ENST00000526204 PLPPR1Q8TBJ4 325 aa18.08■□□□□ 0.49
VPS28-205ENST00000526204 GPHA2Q96T91 129 aa18.08■□□□□ 0.49
VPS28-205ENST00000526204 EGLN1Q9GZT9 426 aa18.08■□□□□ 0.49
VPS28-205ENST00000526204 TUBA4BQ9H853 241 aa18.08■□□□□ 0.49
VPS28-205ENST00000526204 BDP1A6H8Y1 2624 aa18.08■□□□□ 0.48
VPS28-205ENST00000526204 NCOR1O75376 2440 aa18.08■□□□□ 0.48
VPS28-205ENST00000526204 FREM1Q5H8C1 2179 aa18.08■□□□□ 0.48
VPS28-205ENST00000526204 NPIPB11E5RHQ5 1161 aa18.08■□□□□ 0.48
VPS28-205ENST00000526204 OR8G1Q15617 311 aa18.08■□□□□ 0.48
VPS28-205ENST00000526204 TBC1D28Q2M2D7 210 aa18.08■□□□□ 0.48
VPS28-205ENST00000526204 MOB1BQ7L9L4 216 aa18.08■□□□□ 0.48
VPS28-205ENST00000526204 PNPLA5Q7Z6Z6 429 aaPredicted RBP18.08■□□□□ 0.48
VPS28-205ENST00000526204 Q8IYB0 196 aa18.08■□□□□ 0.48
VPS28-205ENST00000526204 OR5C1Q8NGR4 320 aa18.08■□□□□ 0.48
VPS28-205ENST00000526204 TMEM171Q8WVE6 324 aa18.08■□□□□ 0.48
VPS28-205ENST00000526204 WDYHV1Q96HA8 205 aa18.08■□□□□ 0.48
VPS28-205ENST00000526204 RTL8AQ9BWD3 113 aa18.08■□□□□ 0.48
VPS28-205ENST00000526204 KCNJ16Q9NPI9 418 aa18.08■□□□□ 0.48
VPS28-205ENST00000526204 LIPGQ9Y5X9 500 aa18.08■□□□□ 0.48
VPS28-205ENST00000526204 A0A1B0GU03 582 aa18.07■□□□□ 0.48
VPS28-205ENST00000526204 BTBD17A6NE02 478 aa18.07■□□□□ 0.48
VPS28-205ENST00000526204 CDX4O14627 284 aaPredicted RBP18.07■□□□□ 0.48
VPS28-205ENST00000526204 TNFSF15O95150 251 aa18.07■□□□□ 0.48
VPS28-205ENST00000526204 SERPINE2P07093 398 aa18.07■□□□□ 0.48
VPS28-205ENST00000526204 ZNF44P15621 663 aa18.07■□□□□ 0.48
VPS28-205ENST00000526204 C17orf78Q8N4C9 275 aa18.07■□□□□ 0.48
VPS28-205ENST00000526204 TRGV5A0A0B4J1U4 118 aa18.07■□□□□ 0.48
VPS28-205ENST00000526204 TNFSF12O43508 249 aa18.07■□□□□ 0.48
VPS28-205ENST00000526204 CHST1O43916 411 aa18.07■□□□□ 0.48
VPS28-205ENST00000526204 MRPL49Q13405 166 aaKnown RBP18.07■□□□□ 0.48
VPS28-205ENST00000526204 AKIRIN2Q53H80 203 aa18.07■□□□□ 0.48
VPS28-205ENST00000526204 AWAT1Q58HT5 328 aa18.07■□□□□ 0.48
VPS28-205ENST00000526204 OR51B6Q9H340 312 aa18.07■□□□□ 0.48
VPS28-205ENST00000526204 GLRX2Q9NS18 164 aa18.07■□□□□ 0.48
VPS28-205ENST00000526204 ERRFI1Q9UJM3 462 aaPredicted RBP18.07■□□□□ 0.48
VPS28-205ENST00000526204 C14orf79Q96F83 325 aa18.06■□□□□ 0.48
VPS28-205ENST00000526204 CLCC1Q96S66 551 aa18.06■□□□□ 0.48
VPS28-205ENST00000526204 DEFB127Q9H1M4 99 aa18.06■□□□□ 0.48
VPS28-205ENST00000526204 RNF115Q9Y4L5 304 aa18.06■□□□□ 0.48
VPS28-205ENST00000526204 C7orf77A4D0Y5 90 aa18.05■□□□□ 0.48
VPS28-205ENST00000526204 RHBDL1O75783 438 aa18.05■□□□□ 0.48
VPS28-205ENST00000526204 TMEM50AO95807 157 aa18.05■□□□□ 0.48
VPS28-205ENST00000526204 PPP1CCP36873 323 aaKnown RBP18.05■□□□□ 0.48
VPS28-205ENST00000526204 DYNLT3P51808 116 aa18.05■□□□□ 0.48
VPS28-205ENST00000526204 RNF212Q495C1 297 aa18.05■□□□□ 0.48
VPS28-205ENST00000526204 Q6P435 159 aa18.05■□□□□ 0.48
VPS28-205ENST00000526204 OR10V1Q8NGI7 309 aa18.05■□□□□ 0.48
VPS28-205ENST00000526204 TAAR3PQ9P1P4 343 aa18.05■□□□□ 0.48
VPS28-205ENST00000526204 POLDIP2Q9Y2S7 368 aa18.05■□□□□ 0.48
VPS28-205ENST00000526204 FBXO7Q9Y3I1 522 aa18.05■□□□□ 0.48
VPS28-205ENST00000526204 M0R036 132 aa18.05■□□□□ 0.48
VPS28-205ENST00000526204 RHEBQ15382 184 aa18.05■□□□□ 0.48
VPS28-205ENST00000526204 CST7O76096 145 aa18.04■□□□□ 0.48
VPS28-205ENST00000526204 MT-ND4LP03901 98 aa18.04■□□□□ 0.48
VPS28-205ENST00000526204 SNRNP70P08621 437 aaKnown RBP18.04■□□□□ 0.48
VPS28-205ENST00000526204 CEACAM1P13688 526 aa18.04■□□□□ 0.48
VPS28-205ENST00000526204 RAB5BP61020 215 aa18.04■□□□□ 0.48
VPS28-205ENST00000526204 SHEQ5VZ18 495 aa18.04■□□□□ 0.48
VPS28-205ENST00000526204 DHRS13Q6UX07 377 aa18.04■□□□□ 0.48
VPS28-205ENST00000526204 ETV3LQ6ZN32 361 aa18.04■□□□□ 0.48
VPS28-205ENST00000526204 ODF3L1Q8IXM7 274 aa18.04■□□□□ 0.48
VPS28-205ENST00000526204 OR1J1Q8NGS3 322 aa18.04■□□□□ 0.48
VPS28-205ENST00000526204 AHCTF1Q8WYP5 2266 aa18.04■□□□□ 0.48
VPS28-205ENST00000526204 FREM2Q5SZK8 3169 aa18.04■□□□□ 0.48
VPS28-205ENST00000526204 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP18.04■□□□□ 0.48
VPS28-205ENST00000526204 SPATA46Q5T0L3 261 aa18.04■□□□□ 0.48
VPS28-205ENST00000526204 STX12Q86Y82 276 aa18.04■□□□□ 0.48
VPS28-205ENST00000526204 IL1F10Q8WWZ1 152 aa18.04■□□□□ 0.48
VPS28-205ENST00000526204 RAB40CQ96S21 281 aa18.04■□□□□ 0.48
VPS28-205ENST00000526204 ATP5SQ99766 215 aa18.04■□□□□ 0.48
VPS28-205ENST00000526204 M0R296 226 aa18.03■□□□□ 0.48
VPS28-205ENST00000526204 DFFBO76075 338 aa18.03■□□□□ 0.48
VPS28-205ENST00000526204 ZNF14P17017 642 aaPredicted RBP18.03■□□□□ 0.48
VPS28-205ENST00000526204 RPL23AP62750 156 aaKnown RBP18.03■□□□□ 0.48
VPS28-205ENST00000526204 TGFBR3Q03167 851 aa18.03■□□□□ 0.48
VPS28-205ENST00000526204 ZNF766Q5HY98 468 aa18.03■□□□□ 0.48
VPS28-205ENST00000526204 HES3Q5TGS1 186 aa18.03■□□□□ 0.48
VPS28-205ENST00000526204 TMEM178AQ8NBL3 297 aa18.03■□□□□ 0.48
VPS28-205ENST00000526204 OR51H1Q8NH63 302 aa18.03■□□□□ 0.48
VPS28-205ENST00000526204 LSM10Q969L4 123 aaKnown RBP18.03■□□□□ 0.48
VPS28-205ENST00000526204 GPR146Q96CH1 333 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms